Array 1 94577-95702 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLSA01000008.1 Salmonella enterica strain CFSAN044890 CFSAN044890_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94577 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 94638 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 94699 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 94760 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 94821 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 94882 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 94943 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 95004 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 95065 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 95126 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 95187 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 95248 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 95309 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 95370 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 95431 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 95492 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 95553 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 95614 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 95675 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111961-114067 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLSA01000008.1 Salmonella enterica strain CFSAN044890 CFSAN044890_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111961 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 112022 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 112083 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 112144 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 112206 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 112267 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 112328 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 112389 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 112450 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 112511 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 112572 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 112633 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 112694 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 112755 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 112816 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 112877 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 112939 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 113000 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 113062 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 113123 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 113184 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 113245 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 113306 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 113367 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 113428 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 113489 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 113550 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 113611 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 113672 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 113733 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 113794 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 113855 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 113916 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 113977 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 114038 29 89.7 0 A...........TC............... | A [114064] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //