Array 1 7108-8752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCSV01000003.1 Pseudomonas aeruginosa strain Pae_CF67.01l CF67.01l_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7108 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 7168 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 7228 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 7288 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 7348 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 7408 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 7468 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 7528 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 7588 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 7648 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 7708 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 7768 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 7829 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 7889 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 7949 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 8009 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 8069 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8129 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 8189 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 8249 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8305 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8365 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 8425 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8485 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8545 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8605 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8665 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8725 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 18976-17627 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCSV01000003.1 Pseudomonas aeruginosa strain Pae_CF67.01l CF67.01l_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18975 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 18915 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 18855 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 18795 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 18735 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 18675 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 18615 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 18555 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 18495 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 18435 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 18375 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 18315 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 18255 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 18195 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 18135 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 18075 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 18015 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 17955 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 17895 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 17835 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 17775 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 17715 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 17654 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 111758-111129 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCSV01000022.1 Pseudomonas aeruginosa strain Pae_CF67.01l CF67.01l_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111757 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 111697 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 111637 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 111577 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 111516 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 111456 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 111396 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 111336 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 111276 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 111216 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 111156 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //