Array 1 3074127-3077390 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTK01000001.1 Ralstonia solanacearum K60 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3074127 29 100.0 32 ............................. GAGTAGCCCATGTCGAATTACCTTGGCGTCAA 3074188 29 96.6 32 ............................A GCTGCAGCATGGCTTTCCTTATGCCGCCTTCT 3074249 29 100.0 32 ............................. GCGAATGGCCAAATCAATGGAGCCTCTCGCAT 3074310 29 100.0 32 ............................. TTTTTGTACTCAGATGCGCGTGTAGCCGGACT 3074371 29 96.6 32 ............................C TTTCCACGAATGCCTTTGCCGCGCTCGCCGAT 3074432 29 100.0 32 ............................. CTGCTGGTCAGATTGGCTCTTCCAATGCTATC 3074493 29 100.0 32 ............................. CCAATATCCCCAACAAATGGTACGTTCCTTTT 3074554 29 100.0 32 ............................. GAAGTCGCCGCCGCGAAGGCATCCGAACGCGA 3074615 29 100.0 32 ............................. CGCGACGTGCGCGGCGTGCTGGGCGATGTGTA 3074676 29 100.0 32 ............................. GGTTTGCACCCTGCGCTGCCGAGGTCGTCGGC 3074737 29 100.0 32 ............................. CTGTCGAGGCCGCGCTGGCCGACAAAGCCGCG 3074798 29 100.0 32 ............................. CGTGCATCAGACCCATCCGGCATCTTGATGTA 3074859 29 96.6 32 ............................A AGATAGCTGCTCGTACTTCTCGCTGTCGATAA 3074920 29 100.0 32 ............................. CCGGCTACACCATCCAGATCGGTCAACCGGTC 3074981 29 100.0 32 ............................. TCCAACCGACGCGATTCAGAATCGCGACCGGT 3075042 29 100.0 32 ............................. TTTCCGCGACCAGTGCGCGCTTGATGGGGCAA 3075103 29 100.0 32 ............................. ACATTTTAATGCTCCTTTTGAATGCGCAGCAG 3075164 29 100.0 32 ............................. TCGGACCGGTGGACGTGACGGTGGTCGTGCTG 3075225 29 100.0 32 ............................. CTCGCAGCCGCGATGCTCGGCACGTCGACCAT 3075286 29 100.0 32 ............................. TTTCCGAATGCGCTTTCGTTCATTCCGGTAAT 3075347 29 100.0 32 ............................. AACCGGTGCGCCAAAGGGGAAACGCACGGGCG 3075408 29 100.0 32 ............................. AGGCGGCGGGTGTACAGTCGATTTATAACAAT 3075469 29 100.0 32 ............................. AAACACGCATTCCCATGGCGGCTATGGCCGCA 3075530 29 100.0 32 ............................. GGAGGCGACCCAAATATTGATTGACAAATTAG 3075591 29 100.0 32 ............................. CGACTGTGCAAATCGCAGAAGCGGCCGCTGAA 3075652 29 100.0 32 ............................. ATTAAACTCATGAATTGTTGTGAAGAATTCCC 3075713 29 100.0 32 ............................. GCTCAGTTTATGGTCCGGCCACTGGCCCGCGT 3075774 29 100.0 32 ............................. TCGGTCGGCTTACCGTCCAGGTCCGCGAACTC 3075835 29 96.6 32 ............................T CTGGATGGCGGCCGGCGTAGACCTGTTCCACC 3075896 29 100.0 32 ............................. TGAGTACAAGACATCGCTTCAATTCCAACGGC 3075957 29 100.0 32 ............................. CGAACTTGAACCCGTAATCTCTCGTCACGTTC 3076018 29 100.0 32 ............................. GGTATCTATCAGATCCTTCTTATGACAATCGC 3076079 29 100.0 32 ............................. ACGCCCGTGAACGAGTACTTCGCCGATCACCC 3076140 29 100.0 33 ............................. GTTTTCAGTCGGCCCAAAACCAGGATTCGAAGT 3076202 29 100.0 32 ............................. ACTCACTAGGCATCCACGGCGTCTCCACGATT 3076263 29 100.0 32 ............................. GTGTTGTGTATGTACCGAAACTCAGCGAGAAC 3076324 29 100.0 32 ............................. TATTCCGTAACTATCGCGCATCGTATGCCCAT 3076385 29 100.0 32 ............................. GGCTAAATCATGGATACGTCTCTCACGGCGGC 3076446 29 100.0 32 ............................. GAGAATGACACCATGTGCATGACGATCGAACA 3076507 29 100.0 32 ............................. GCTGCGACAGCTTTCGACATGTCCTGAAAGAA 3076568 29 100.0 32 ............................. CTTCAGTCGATCAACCCCATTCCAAAGCCGCT 3076629 29 100.0 32 ............................. TGCATGGCGTTGCAGCGCGTGGCCATGTAGGC 3076690 29 100.0 32 ............................. GCGGCCTACGAGCATCAGCAAAAACTTGTTGA 3076751 29 100.0 32 ............................. CCACCATGCGACGCCGCAAAGCATCCCGTCCG 3076812 29 100.0 32 ............................. TCGCACCCAAAGCGACGACCAGCCGGACGAAG 3076873 29 100.0 33 ............................. TTCACCGTGAACGCCGATGAGTTGCGGAAAGTG 3076935 29 100.0 32 ............................. ACCGCGCTTCACCAGCGCCTTGACCGTTCAAG 3076996 29 100.0 32 ............................. GCTTATCTGGGTTGCGCTGGGTCAACCTGGAT 3077057 29 100.0 32 ............................. AATCGACTGTTCTGCCTCAATACTGTGCGGTA 3077118 29 100.0 32 ............................. CGTGGCGGCGTCATAGACCACCGGCTCAGCAT 3077179 29 96.6 32 .......T..................... CGCCTGTTCCGGTGACTTTATCGATGCTATCT 3077240 29 100.0 32 ............................. ATCGGGCACGAGTGGCGCTGCATCCGCTTCTA 3077301 29 100.0 32 ............................. GCGGCACTCACGCCGGCGGAATACGCCGATGC 3077362 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.7 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGTATTCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAAACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCTGCATCAACAGCTCACCGCTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACGGATTAATGCCTTCCACTATCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTAGCAGTCAGCTTTATCACCTTCTTGTCTTTCATGCCTTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3086813-3091955 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTK01000001.1 Ralstonia solanacearum K60 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3086813 29 100.0 32 ............................. CGGGTCCTTGGGCAGCAACTTCGGGATCTTCT 3086874 29 100.0 32 ............................. AACAATTTAGCTCTTTTGTGCAGCTTGCACGA 3086935 29 100.0 32 ............................. CTGTATTACTTCGACGCCCAGGTGTATCCGGG 3086996 29 100.0 32 ............................. CCGACACGCCGCCGGATTACCGCGTCTATCAT 3087057 29 100.0 32 ............................. ACTGGTTTTGGTGAAAAAATTTAGCGCAATGA 3087118 29 96.6 32 ............................C TGAACGTCAGCGAGGCGCATCCGTAACATGGC 3087179 29 100.0 32 ............................. GTGGACAACCCGAGGTCGCGGGCTACGCCGAT 3087240 29 96.6 32 ............................A CCGATTGGTTTCCAAGCAACACTAGACCTGTC 3087301 29 100.0 32 ............................. TACAAGGTGCTGGCCAAGCTCGGCCGGTTCGA 3087362 29 100.0 32 ............................. ACCGCTCATGTTGCCGCCCGTGACAGGAGAGA 3087423 29 100.0 33 ............................. TAGTCGCGTCGTGATAGGTGCCAAACGCCGAGC 3087485 29 100.0 32 ............................. GCGCTTGGTATAAAAATGCTCGACAAATTCTT 3087546 29 100.0 32 ............................. CCAGTCATCAAGCCGCAGCAGAATGATGCGCT 3087607 29 100.0 32 ............................. GCATCAAAACGAAAGAGGACAAAAACACCGGG 3087668 29 100.0 32 ............................. GCCGATGCCGTTCCAGAACTGTACCTGCGTCA 3087729 29 100.0 32 ............................. TACCAGAATCTGCGCCAATTTTTGGAAGAACT 3087790 29 100.0 32 ............................. CGCCCAATCAATGGCGGCCTCCTCCAATTCGA 3087851 29 100.0 32 ............................. TGCTTATTGCGCCAACGACGCGTATCAGCATC 3087912 29 100.0 32 ............................. CGCGGGTATCGGGACCACACCTACAACCTGTC 3087973 29 100.0 32 ............................. TCTTCAAAGGTCGCTACTCGGTCGAAATTATA 3088034 29 100.0 32 ............................. GCATCGAGAAATTGCTGCTGTCATTGCATACG 3088095 29 100.0 32 ............................. GTGTGGGAGGGCAATCGGCAGATCGAGCGCTG 3088156 29 100.0 32 ............................. CAGCAGTGCGCACGGCAAAGCTGAACGAGTAT 3088217 29 100.0 32 ............................. GCGCAGGCGCAGAACGGTAACGAAGGTCTGAC 3088278 29 100.0 32 ............................. TCAACATGGACGGCGAAACAATCATCACGTGG 3088339 29 100.0 32 ............................. ACCAACTCACGGCCAATGAACATATGGCCGAT 3088400 29 100.0 32 ............................. GCGTCTCGGTGCGTCCGATTGTCACTTACGAG 3088461 29 100.0 32 ............................. CGCCGTCAGTTGGTTCGATTGGGGTGATTGCA 3088522 29 100.0 32 ............................. ACGGCGAGAAGGTCATCGGTCAGATCGGCGGC 3088583 29 100.0 32 ............................. CTAAAGTCCGATTGGTATCCAGGCGACGTTAA 3088644 29 100.0 32 ............................. GGGAAATGCACGGGCGGTGAAATCAGCCTCCG 3088705 29 100.0 32 ............................. ATGTGGACGGCATGCGCGCGCGGTACGCGTCG 3088766 29 100.0 32 ............................. AAGTGGAACGACCGACAGGCGTGCTGGTCGAG 3088827 29 100.0 32 ............................. GAATTGGAGCAGGATGAGGAAGCGATCTACCG 3088888 29 100.0 32 ............................. CATGCCGAGTGCGCGCGCCAATTTGGCCTCCG 3088949 29 100.0 32 ............................. GCCGAGCAGCGGGTAGATGGTCGGGCCCGCGG 3089010 29 100.0 32 ............................. GGCACGGCGGGGACGCCGGTGCTCGTCCCCGA 3089071 29 100.0 32 ............................. GTCAACGGGCAGCTCTCGCAACTGCTGAGCCG 3089132 29 100.0 32 ............................. CACATGGCATGAAAATTGCCAGGGGCACATGG 3089193 29 100.0 32 ............................. CTATGGGTCCTTCTGTGGCCCCGGATTATGGC 3089254 29 100.0 32 ............................. TTCATGGAACCAAGGCCACTCGTACCACCGGT 3089315 29 100.0 32 ............................. CAACCCGTGAATGGGCTGTCACTCTTCTTCAC 3089376 29 100.0 32 ............................. GCTTGGCGCGAGACTTCGGCAGTGATGCCGAT 3089437 29 100.0 33 ............................. GGGCCAGATTTGACCCCACTCGGCCACTCAACC 3089499 29 100.0 32 ............................. AACCCACCTTGGCCGGACTCGTCCTTGCCATC 3089560 29 96.6 33 ............................C TCCGGCCGCTCGCCCGCCATCCGCGCCGACGAC 3089622 29 100.0 32 ............................. CAATGCCAGGGGCATCCGGGCCAGGAACTTGA 3089683 29 100.0 32 ............................. TCCCAGCAGGAAGGCGCCGATGATGCGCGCCG 3089744 29 100.0 32 ............................. TCAGGCTGGCCTCGCTCGTTCGTGATGCGGAA 3089805 29 100.0 32 ............................. ACGGGATGCACGCTGCATGCGCAACAGCGCAC 3089866 29 100.0 32 ............................. CGCCATATCCAATCCGGCCGGCGCCGGCCAGA 3089927 29 100.0 32 ............................. CCTGTCCTTCGGTAGGCGCCTGCAGCCACGTC 3089988 29 100.0 32 ............................. TTCCCATCGATGATCCCCTTCTCAAAACATTG 3090049 29 100.0 32 ............................. GCTTATTTGGGTTGCGCTGGGTCAACCTGGAT 3090110 29 100.0 32 ............................. CCGTTCACCACTGACATGGATGCATGGCATTG 3090171 29 100.0 33 ............................. GCTCGTCAGCATCTGCTCGATCTTGATGCGTGC 3090233 29 100.0 17 ............................. CCGCCGGGTATCTGATC Deletion [3090279] 3090279 29 100.0 32 ............................. TTCGGCAGCACTGGAGCCTTCGATTCAAGCTC 3090340 29 100.0 32 ............................. AGGCGGGCGCCATGTCTTTCTTCAAAACGATT 3090401 29 100.0 32 ............................. TCTAAACGTGTGAGGAAAATCTAAATGCGGTG 3090462 29 100.0 32 ............................. CGGTCTTAGTCGTATTTGATCGGGCAACACCG 3090523 29 100.0 32 ............................. AGGGCTGGATGTATCCGGCCGCGTTCGCCAAG 3090584 29 100.0 32 ............................. ACGGGCTCGCCTCATTCCTGATTGCAGAAGGC 3090645 29 100.0 32 ............................. TCGACGCCATCATCGATGAACCGGTTGTAGTA 3090706 29 100.0 32 ............................. CGGTTGCTTATGCTTTTGGCATGGCTCATGCG 3090767 29 100.0 32 ............................. CGGTTGCTTATGCTTTTGGCATGGCTCATGCG 3090828 29 100.0 32 ............................. TCGCCTGAGTCAGGCACGCCCAGTTGATAGAA 3090889 29 100.0 32 ............................. CTCTGGTCGATTCGCTTTGCGGTGCTGAGCGC 3090950 29 100.0 32 ............................. TGACTATTACGCAGGACATGGTGGGGCAGACT 3091011 29 100.0 32 ............................. CTGGTGGCGCGCGTGGACAGCGTTGAACTGGG 3091072 29 100.0 32 ............................. CAGGTTTCTTTGATGCGGCCGCCGGTGGTGGC 3091133 29 100.0 32 ............................. GTAAAAAGCTGCGTATGCGTGCCGCGTACACC 3091194 29 100.0 32 ............................. CGGTCGATCAGCTGCTGCAGACGCAATTCGGC 3091255 29 100.0 32 ............................. CGGCTGCTTATGCTTTTGGCATGGCTCATGCG 3091316 29 100.0 32 ............................. GAGCGCGGACGACGTAGTGTTGGTGGTGACGG 3091377 29 100.0 32 ............................. GAGAATGACATGTGCATGACGATCGAACAGGC 3091438 29 100.0 32 ............................. ATTCCAGAGCCGCAGCTGATGCAGTTGATCGG 3091499 29 100.0 32 ............................. ACAGGTTGCGCGAGCTTTACGCCCACCCCGCG 3091560 29 100.0 32 ............................. CACTACGCCGCGTTTGAGCAGGCGGGCCTGGA 3091621 29 100.0 32 ............................. CTGCGTGCTCAATTGCGTGCCTTGTTGGGTTG 3091682 29 96.6 32 ............................A ACTGGCAAGTGGGCGCAACCGTGAAGGTTGGC 3091743 29 100.0 32 ............................. TCGTGGCATCCGCTCGAACAGCGGGCGGGTGT 3091804 29 100.0 32 ............................. AAGCGGTATTCGGTCGAAGGCCCGGTGGAATT 3091865 29 86.2 32 ............TGC..A........... GCCACCAAGACGGCGAGTGAGGATATGCGAAT 3091926 29 82.8 0 .........A.AT...........TG... | G [3091943] ========== ====== ====== ====== ============================= ================================= ================== 85 29 99.5 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCTGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTCCGCGCCGGCGTATACATCGGCGATGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCAGGCAGCCGATGTCACGACCCGGATGCCGCTACACGCTAGTGCCGGCTTGACCGCGCCTTTTAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCTGGCTGCGACGCGACATCGCCGCTGGGCTGGATCAGGCCGCCAGCGCGGCACGCGCAGCGGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCATGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //