Array 1 118640-116961 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDX01000008.1 Salmonella enterica subsp. enterica serovar Bonariensis strain BCW_2647 NODE_8_length_188428_cov_1.82568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118639 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 118578 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 118517 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 118456 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 118395 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 118334 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 118273 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 118212 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 118151 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 118090 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 118029 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 117968 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 117907 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 117846 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 117785 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 117724 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 117663 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 117602 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 117540 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 117478 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 117417 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 117356 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 117295 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 117234 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 117173 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 117112 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 117051 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 116990 29 100.0 0 ............................. | A [116963] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGTATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137179-135321 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDX01000008.1 Salmonella enterica subsp. enterica serovar Bonariensis strain BCW_2647 NODE_8_length_188428_cov_1.82568, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 137178 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 137117 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 137056 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 136995 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 136934 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 136873 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 136812 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 136751 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 136690 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 136629 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 136568 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 136507 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 136446 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 136385 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 136324 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 136263 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 136202 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 136141 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 136080 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 136019 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 135958 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 135897 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 135836 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 135775 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 135714 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 135653 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 135592 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 135531 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 135470 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 135409 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 135348 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //