Array 1 31284-33506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWD010000007.1 Bifidobacterium longum subsp. longum strain 359B Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 31284 36 100.0 28 .................................... CACCTCACCTCACCTCGTTCTGCGTCGA 31348 36 100.0 28 .................................... CACACGCGCGTGTAGATGTCGCCTCTGC 31412 36 100.0 29 .................................... ATTATGCAATCAATAATGACTTCAGGGAC 31477 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGGCCG 31542 36 100.0 29 .................................... AGGCAACGCGCATGGACGAGGCAATCTAT 31607 36 100.0 28 .................................... GCCCTTAAAGCGGGCGCGCAGCTCAGGA 31671 36 100.0 29 .................................... CGGTGACGTCAAGACGAAAAACAGCAATG 31736 36 100.0 28 .................................... TTGTCACGGCCGTGGTTATCGCTATCAC 31800 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 31864 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 31928 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 31993 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 32057 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 32121 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 32185 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 32249 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 32313 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 32377 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 32441 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 32506 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 32570 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 32634 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 32699 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 32763 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 32827 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 32891 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 32956 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 33021 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 33086 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 33150 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 33215 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 33279 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 33343 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 33407 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 33471 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 35 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGTGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 40662-40226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERWD010000005.1 Bifidobacterium longum subsp. longum strain 359B Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 40661 25 77.8 72 GA....-..-...........G..C.. AGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTGCGGTCCGA 40564 27 59.3 33 GC.ACG..C.....C...G.A..C.C. ACGGCGGTCATCACGATCGCCACGGTCATCGCG 40504 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AAG [40498] 40420 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 40360 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [40313] 40312 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 40255 27 81.5 0 ......A.......C....C.....CG | CC,G [40230,40235] ========== ====== ====== ====== =========================== ======================================================================== ================== 7 27 85.2 41 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : TGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGTCGC # Right flank : ATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTAAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCAATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGGA # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:-0.92, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //