Array 1 50-1728 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASX01000015.1 Actinobaculum suis strain C1-22-1 C1-22-1_contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50 29 100.0 32 ............................. GTAGCCGCGGGCGCGTATAGCGGCGGCAAATT 111 29 100.0 32 ............................. ATGGGCGGTTGTGGGGGTGGTGGTTTGTGGCT 172 29 100.0 32 ............................. GTGGTAGGCGACGAAATTCATTGCCCCCACTA 233 29 100.0 32 ............................. GGCCTTAATTTTGAGGGTGACCTCCCTATCGA 294 29 100.0 32 ............................. TACGAAGAGCCAATACGGGAATAACTCAATCT 355 29 100.0 32 ............................. TTCTGGGACTTTCCGCTCTTCTTCTAGCCAAT 416 29 100.0 32 ............................. TAGACCTAATCGACACCCTCGACTATTGCCCC 477 29 96.6 32 ........................C.... GTACGGGGATACAGGCCGCCCGAACCGGCTTG 538 29 100.0 32 ............................. GTATGATCTGGTGGCTGATCGGGGCGGGATTA 599 29 100.0 32 ............................. AGAAAGCGACATCGCCGGGTTGTGGGAACACC 660 29 96.6 32 ............................T CGTTGCTGTGGGCGGGGCCTATGGGCGGGGAG 721 29 100.0 32 ............................. CGAATTAACCGGAATAAACGCGTGCACAGAAT 782 29 100.0 32 ............................. CGGTAATAGGGTTACGTATACCGCGGCCCAAC 843 29 100.0 32 ............................. CGCTCGCTCCACCACCTGCCGCGAAACGCCCG 904 29 100.0 32 ............................. GGGCTTTACGCTCTGCCAGGCCTTCACGGCGC 965 29 100.0 32 ............................. CTGCTCAGGACGCGGGCGCGCAACACGGCCGG 1026 29 100.0 33 ............................. CCCTAATCAGTGTGCCCGCCGGTAATAGCGGCG 1088 29 100.0 32 ............................. ATGCCATGCTCCACTACAACAAGGACACCCCC 1149 29 100.0 33 ............................. GGGCACTGTCTTTTCTTCCATCTCGGTTTCCTT 1211 29 100.0 32 ............................. CTTCGGGGTCTTTCAATCCCCAGCCACTAACG 1272 29 100.0 32 ............................. CTGCGGTACCGGCATGGCTGGAGACTTCAACA 1333 29 100.0 32 ............................. TTCGAGAACTACGCCTTTGATGTCGTCGGCTA 1394 29 100.0 33 ............................. AGCTCAGGGCCTGATAACTCTCGCCTACCGCAA 1456 29 100.0 32 ............................. GTATTAGTTTTGCGCTTGGTGATGAAGCGGGC 1517 29 100.0 32 ............................. GGGATGAAATGATCCCGCTAGGGCACCATGTT 1578 29 100.0 32 ............................. CGCCCTGGGAGATGGTTTGCCTTACGGTCGCA 1639 29 100.0 32 ............................. GGAAGAAGCTTTAGCCCGGGCCCGGCTAGCCG 1700 29 96.6 0 ..........................C.. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 CTCTTCTCCGCACGCGCGGAGGTATTTCC # Left flank : CGCGCGGAGGTATTTCCCACGTTGTGCAAGCTCACTGAGTGCTCCGTGAC # Right flank : CCCCCCCCCCGCAGGATCGCGCCAGGGCGGGTTCTAGGGATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACGCGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 18-352 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASX01000033.1 Actinobaculum suis strain C1-22-1 C1-22-1_contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18 30 100.0 31 .............................. AGGAATACAGGTATTTTCTGGGCCGGCTTGC 79 30 100.0 31 .............................. GCCGCTATGATCTCTTTCTGCGATAGTCCAA 140 30 96.7 31 .............................G TGCGGATCAAAATCTGTAAACGTTCAACCCC 201 30 96.7 31 ............................A. CGCCCAGCTCGTAAGCTTTATGCGTTGCACG 262 30 100.0 31 .............................. AGAGAAACCCTAGGGTTGGCCAGTTTACTTT 323 30 96.7 0 .....................A........ | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.4 31 CTCTTCTCCGCACGCGCGGAGGTATTTCCC # Left flank : CCAGTCGCCTCCTGCCGC # Right flank : CAGTGTTGCAACCGCATTAGCCGCATCGCCCGGGGTTTTGTAATCCTCCTTGAAGTTCACGTTGCTCGTTGTGAGAAGGGTGTGGCGTCATGAGTTGGCGGGCGTCTGCGTGGGCTTTGGATCAGGTGCGTGGTATTGGTGCTAATTGCAAGCTCGTGCTGCTGTCGTTGTGCGAGTTTGCGAATGATGAGCAGGTGACGTGGCGGTCGATGGGTGAGATAGCTCATCGTTCTGAGTGTGAGGTGCGTACCGTGAAGACTCATTTGAAGTCTTTGGAGGAGTGGGGGCTTATTACTCGCACGCCTCGTTATCGGTGGTGCGATTCTGATGCCCCCTCGTGTGCTAGTCGTGGTGCTCATAAGCATCGGTCGGGTACTGATTATCGGGTGAATATGGAGGTCGGTGACTTTGATGCTTCAAAGCAGGAAGCACCGGCCGATAAACCTGAACCTGCGGAAAACCGTCCTGTGGATAACTCGCCTGTGGAAAACTTGCCTGTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACGCGCGGAGGTATTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 3693-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASX01000017.1 Actinobaculum suis strain C1-22-1 C1-22-1_contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3692 29 100.0 32 ............................. TTTTTCTGATCCCGCATATTCGCCAATACTTG 3631 29 100.0 32 ............................. GCGATTTACAAAAACGTGAAACTACGACATGT 3570 29 100.0 32 ............................. CCGTCGATCCCGGTCTGAATCGTATATTTCAT 3509 29 100.0 32 ............................. GGCGCATAATGACGCCCATGACCAGCTCTCTC 3448 29 100.0 32 ............................. CCTCCCTCGCGAGGAATACCCCTGCAAAGCTG 3387 29 100.0 32 ............................. GCCCATGGGTCTGCTCCTTCCAGATCGATTTC 3326 29 100.0 32 ............................. TCGTAATTACTACCGACACTTGGAAGCTCGAA 3265 29 100.0 32 ............................. CTGGCAATGCTTTCAGCGCCCGGCCTAGAGCG 3204 29 96.6 32 ............................G GGCGGGCGTTTCGCGGCAGATGGTGGAACGAG 3143 29 100.0 32 ............................. GCACTTTCCGCGAAGAACACGGCTGACACGCT 3082 29 100.0 32 ............................. CGATTGACCCTATCGGCGAACCTAAAAAACCT 3021 29 100.0 32 ............................. GCGGGCGGCGAGCGGCGGCTCCTTATCTAGCC 2960 29 100.0 32 ............................. CAGGCAAGCGCGTTCCGTAGCTCATGGCGCAC 2899 29 100.0 32 ............................. GATCGTTATGCACCACACCGCCGGGCCGGCGG 2838 29 96.6 32 ............................A GACTGGTTTTCTGCCGCGCGGCGGCCCGATCG 2777 29 100.0 32 ............................. CGTGACACGCTCAAGATCAGCGCAGGCCCCGA 2716 29 100.0 32 ............................. CCGGATCGGTCGATCTACGCGGCCTATGAAAA 2655 29 100.0 32 ............................. AGGGGTGTCAGTTTAGGCTTAGGCCTGGCTGA 2594 29 100.0 32 ............................. CTGGCAAAGACTGCCAACGAATGCCTAGATGA 2533 29 100.0 32 ............................. GGCACACAACGCGTCATCGATGGTGATCTTGG 2472 29 100.0 32 ............................. AGAAGTCGCCGCCGCGGCAAACGTTTCCAGGA 2411 29 100.0 32 ............................. CGATCATGATCTGCTGAGCCTCAAGCAACATA 2350 29 100.0 32 ............................. CTACAGGGCGTGAGGGCCGGCCAGCTCTGGAG 2289 29 100.0 32 ............................. AGTAATGAGTAAATACGCTTTCACGCCACACA 2228 29 100.0 32 ............................. TACGCGGCGGGTCCCATCGATCTTCTCCGTGT 2167 29 100.0 32 ............................. TACTTACGGCAAAAAGTTGAGCAATCGGGTAA 2106 29 100.0 32 ............................. TGGACGCACTTGTGAATGATCTTGGGGCGGCC 2045 29 100.0 32 ............................. CGCCCCCGATCGGGCGGCCACTGTTTCCCTGC 1984 29 100.0 33 ............................. CCCCTGCATCCGGCCCGAACTGTGCCCGGGTAG 1922 29 100.0 32 ............................. ATGGCCAATTTCCGTGCATCTCTCTCATCCGG 1861 29 100.0 32 ............................. AGCACTGGCTTCAGCAAGCCAGCTAAACAAAG 1800 29 100.0 32 ............................. GAACCTTGCTGCATGGCTTGGACGTGACGGAA 1739 29 100.0 32 ............................. AAGACCCTGTCAGAAGTTACGCGTAGCCAGGA 1678 29 100.0 32 ............................. CCCGGCCGGCCGCGTATCCGCCCCACACTCCT 1617 29 100.0 32 ............................. GGGGTTCGGGCGGATATCCGCCGGGCCGTGCT 1556 29 100.0 32 ............................. CGTCATTGGCCCGAATTCACCATCGACTACGC 1495 29 100.0 32 ............................. CTAGACCAAGCTGAGCGAGTGGACCGGAAAGG 1434 29 100.0 32 ............................. GTAACCAAGCGCGAGCGGCAAATTTGGCGGCA 1373 29 100.0 32 ............................. CTACCTAAAACTCGATCCACCATCTGCCGCGA 1312 29 96.6 32 ............................T GCGATTATTGGGGCCACATCGGACCTCACCCC 1251 29 100.0 41 ............................. CAGGAATACAGGTATTTTCTGGGCCGGCTTGCCGGCCATAA 1181 29 100.0 32 ............................. CTGCCCAGACCCACTCCCACCGGCCACCACAT 1120 29 96.6 32 ............................A CGCCACGCGTGCACAAGCTCATGAGCGAGCGT 1059 29 100.0 32 ............................. GTGGGATCCACAGACCCGCCAGCGGAAAATGA 998 29 96.6 32 ............................T TCGGCTTTCTGCTGACCGAAGGTATTAAGCAG 937 29 100.0 32 ............................. CCGGCGGGGCCGCCCGGAATCATCCACATCGA 876 29 100.0 32 ............................. ATGAATCCCGGGGACCGGCGTGTAGTGGGTGA 815 29 100.0 32 ............................. GCAGGCTAAATGCGGCGTGGAGCGCGTTTAAT 754 29 100.0 32 ............................. ATATTTGACCGAAGCGGTCATTGACGGGGCTG 693 29 100.0 32 ............................. GGGTCGCTAGCGCTTCCACCGGCGGGCGCGTT 632 29 100.0 32 ............................. TCTCCGATGACGCAGTGAGCGGATCCCAAAAG 571 29 100.0 32 ............................. CCCCGCACCTCACTCGTTCTCTTCTTCGACAA 510 29 100.0 32 ............................. TCTCCGCAATCCGGAAGGTTGGCGGTCTGTCG 449 29 100.0 32 ............................. CGATCGCGGCATACCGGTCTGGATTAGCTTGG 388 29 100.0 32 ............................. TTCTTCTCCCCTCCTAACAGCTTTTTGCACCC 327 29 100.0 32 ............................. CAGGCAGGCCCGCTCATCGAAACCCCCAAACA 266 29 100.0 32 ............................. TGGGAAATATAGGACCGCACCGTATTAGGAGA 205 29 100.0 32 ............................. CCGGCCCAGACTGCTAGCGACTGCCTCGGTGC 144 29 100.0 32 ............................. GGCACCCACCGCGTCGTCGATGGCTCTCGTGG 83 29 93.1 0 .......................C.C... | ========== ====== ====== ====== ============================= ========================================= ================== 60 29 99.6 32 CTCTTCTCCGCACGCGCGGAGGTATTTCC # Left flank : CGACGTCGGCTGCGTAAAGAAATACATCGGCAAAATGTGTTGCCAACTATGCTTGATGCTCTAATGGAGATCTTGGAGCCGTATCTGCCGCATCGCGACGATGACAGACTTCTCGATGACTCAGGGGAAGTGCCAGGGCATATGCAGTATGGCAAGGATGAAGAATAGTGTTTGCAGTCATTCAGCTTTCCGCAGTGCCTGAGCACGTACATGGATATGTGAGTAGATTCCTTTCCGAAGTGAGCTCGGGGCTTTACGTGGGCGTTATTTCGCGCAATGTTAAGGAGCAGCTCTGGGAACGCCTCAGCACAGTAACCGGAGAGGGTTCCGCAGTCTTGATCTACAACGATTCTTCCCGCGAGCAAGGATTTGGAATTGAAATGAGCGGGCGGCAAGCCTGCAAGGCACTCGACTTCGACGGCTTGACGCTTTTTGCTTCGCGCCCCGGTAGGATTAACGAAAATTGGGCGAGCGGCCGATAAAACCGCAGGTCATTTAGG # Right flank : CACCATACACTCCCCCGGCCCCCGCTCCCTGGTCTCTTCTCCGCACGCGCGACGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACGCGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //