Array 1 146658-145957 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHKE01000004.1 Escherichia coli strain EC_05 NODE_4_length_231475_cov_36.564564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146657 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 146596 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 146535 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 146474 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 146413 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 146352 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 146291 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 146230 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 146169 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 146107 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 146046 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 145985 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163667-162174 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHKE01000004.1 Escherichia coli strain EC_05 NODE_4_length_231475_cov_36.564564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163666 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 163605 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 163544 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 163483 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 163422 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 163361 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 163300 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 163239 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 163178 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 163117 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 163056 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 162995 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 162934 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 162873 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 162812 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 162751 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 162690 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 162629 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 162568 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 162507 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 162446 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 162385 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 162324 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 162263 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 162202 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //