Array 1 33-3903 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEQF01000044.1 Acinetobacter baumannii strain ARLG-1775 PR303_NODE_86.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33 29 86.2 31 ...AG.......CC............... TCATCTTTTAATGTTTTATTGATTGCGCTAC 93 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 153 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 213 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 273 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 333 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 393 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 453 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 513 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 573 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 633 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 693 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 753 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 815 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 875 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 935 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 995 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 1055 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 1115 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 1175 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 1235 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGCCCCGAA 1295 29 89.7 31 ....G.......CC............... GATACGACAACTACGAAAAGCTTAGCAAAGT 1355 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 1415 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 1475 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 1535 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 1595 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 1655 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 1715 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 1775 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 1835 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 1895 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 1955 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 2015 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 2075 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 2135 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 2195 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 2255 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 2315 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 2375 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 2435 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 2495 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 2555 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 2615 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 2675 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 2735 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 2795 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 2855 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 2915 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 2975 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 3035 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 3095 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 3155 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 3215 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 3275 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 3335 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 3395 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 3455 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 3515 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 3575 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3635 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 3695 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 3755 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 3815 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 3875 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 65 29 93.0 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : AAAATCTCTCTACCTTATTGTCTTTTCGCAGCG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36305-34122 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEQF01000021.1 Acinetobacter baumannii strain ARLG-1775 PR303_NODE_36.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36304 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 36244 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 36184 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 36124 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 36064 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 36004 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 35944 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 35884 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 35824 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 35764 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 35704 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 35644 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 35584 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 35524 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 35464 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 35404 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 35344 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 35284 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 35224 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 35164 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 35104 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 35044 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 34984 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 34924 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 34864 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 34804 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 34744 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 34684 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 34624 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 34564 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 34504 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 34444 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 34384 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 34324 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 34269 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 34209 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 34148 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41395-41782 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEQF01000021.1 Acinetobacter baumannii strain ARLG-1775 PR303_NODE_36.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41395 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 41455 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 41515 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 41575 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 41635 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 41695 28 100.0 32 ............................ ATGAACAACTCATATGAGCAATGCACGATCAT 41755 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAAAAATAATGATCGTTCAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //