Array 1 134644-136055 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBT01000002.1 Enterobacter roggenkampii strain 1-RC-17-04136 1_RC_17_04136_S25_R1_001_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134644 28 100.0 32 ............................ AGTGACAAGGATTTCTTTGAACGCCTTGAGAA 134704 28 100.0 33 ............................ TGTAGAGATAAAGGCGGCCAACCCGGCCAGCAA 134765 28 100.0 33 ............................ TACAAAGGCCGTCGATGCCGTCTGTGTGTTGCT 134826 28 100.0 32 ............................ GTCACACGGTGTCAGTGATGCGTCGACAACGA 134886 28 100.0 32 ............................ AGAGACGAGGCTGAACGGCTTATCTCCTGCAT 134946 28 100.0 32 ............................ AGCTCATCCGAAAAGACATGGGCTTGGCAATC 135006 28 100.0 32 ............................ CGGAGGGGAAGCCATTACCCGGCAAAACCCTT 135066 28 100.0 32 ............................ ACGCCCTGAGTGGCAGCACTATGCCAGTAAAC 135126 28 100.0 32 ............................ AATAGGCCGGAACATTAATTTCGTTGGATGGA 135186 28 100.0 32 ............................ AGGGTCGATCCACTCGCCGCCGATCGCCTTGT 135246 28 100.0 32 ............................ TGATTCGTGCAGCCTAGTCTATTCCGTATAGG 135306 28 100.0 33 ............................ TGGCAGACCAGGAACAAGCGCTTATACATTGGC 135367 28 100.0 32 ............................ ATGCTGCGGCCCTCGTTCGTGTCCTCATACTG 135427 28 100.0 32 ............................ TGAAAATCAAACTTGTAATAGAGGATTGCCCG 135487 28 100.0 32 ............................ TTCTGCATCGAGCCAGCGTACTGCGCCGAATC 135547 28 100.0 32 ............................ ATTGCGCGTAAGCCCTCAGCCGGGCGACCCGG 135607 28 100.0 32 ............................ TGGCGGCGGCTGAATTTTTGCCGCTGGCAAGC 135667 28 100.0 33 ............................ AGGCCCCGGAGCTGTACGGGCTAAACGTCGCGT 135728 28 100.0 32 ............................ CCAATTCCCGCCAGGCGCAGGAGGCCGCGGCA 135788 28 100.0 32 ............................ TCTGTAACGCTTTCGGGCTTACGGCATAGCAC 135848 28 100.0 32 ............................ GTTCAATTTCCATAACACGGTGCCCTTGGCGA 135908 28 100.0 32 ............................ AAACGTGGCTTCATCATCAGAGACTTTGAACG 135968 28 100.0 32 ............................ TGTGCAATCCTTTCAGGATTTCGATCACTTCA 136028 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATCGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTCATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGGTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGAGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGTTTTCACTTCTTCTTCGACGATAGCCATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 150922-152152 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBT01000002.1 Enterobacter roggenkampii strain 1-RC-17-04136 1_RC_17_04136_S25_R1_001_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 150922 28 100.0 32 ............................ TCCGATATATACTGGATATGCATACAGTAGTT 150982 28 100.0 33 ............................ AGCTCATGCAGTTGCAGCAGGTGCCAGCCAACA 151043 28 100.0 32 ............................ TTCCGGCGCGTCAAATCATGAAACAGGCATTT 151103 28 100.0 32 ............................ GCCTGAGGTCAGCAGCCCGGTCATCGGGTTCT 151163 28 100.0 32 ............................ CTCCAAATCGCGCGTCGAATAGCCCGCTAACT 151223 28 100.0 33 ............................ TCTACCGTTGCCGCTACCACTGGAACATAGAAT 151284 28 100.0 32 ............................ TTCCTGCATTATCACTGCGCTGTCAGTCGAGC 151344 28 100.0 32 ............................ GGACGGGTTAATAACGCTTCCGGATGGCAAGG 151404 28 100.0 32 ............................ TGTCTGATTAGCCAGGACACGTACAGCGCCAA 151464 28 100.0 33 ............................ AGCTACCGGCGACTACACCCAAACCCGCGTTTA 151525 28 100.0 32 ............................ ATCGGGGACACCAACAACAAAGAACAGGTCGA 151585 28 100.0 32 ............................ AGCTGGGTTCCGGATCGGCAACAGCAACAGAC 151645 28 100.0 32 ............................ CAAAAGATACCACCGGCTCCGCTGATTCCGCG 151705 28 100.0 32 ............................ TGACGCTTGAAGAAAACCGCTCAATTAACGGC 151765 28 100.0 32 ............................ GGAACTGTCGGTTAATTCGGTTGAATGTGAAC 151825 28 100.0 32 ............................ TGACCAGCAAGCATTTCAGGGGTAACTGGCGG 151885 28 100.0 32 ............................ CCTTATACATGCTGTGTGGACCCTCCATGACC 151945 28 100.0 32 ............................ TGAATCGCCAGCTGAGCGTACTGGAAACCACC 152005 28 100.0 32 ............................ AAATGCAGGGCCATCAGCGCGGAAGCGGATAC 152065 28 100.0 32 ............................ ACCACGGCAACACTCTGCACGGAGCCGTCACG 152125 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCAATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATGGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAATTTGTGGCGTCGGTGACAGACCACCGTCGCCACTGGCTTGACCCTTTTTTTTGATGATTACGTAACTTATTGATTTATAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : AAAGGCCGCCAGGCTTTGATGCCATGGAAATGGCGTCGCTGCCACACGGAAAGCACAAGTAACAATCTCTCACAAATATTCACTGCGTCGATTTAAAAACGCAATACCATCATACCCACGCTCTCCATTTTCTGATTAAATAAAAATTCCATTCAGGAGTTAATTATATTGCTATTGATATATTATTTGTAAGAATGATACATCAAAGAAAAAAATAATTTTTTGTTTAATTATCACCGAAATTTCCATTCATTTGATATCTATCACATTTGCATTTGTCTTATCTCCGATAACATACGCGCATTCAACACTTTGAAATAAAAGCCGTTGCCATGCCTGCAAATAGCATCACCCCTACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 161706-162335 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRBT01000002.1 Enterobacter roggenkampii strain 1-RC-17-04136 1_RC_17_04136_S25_R1_001_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 161706 28 100.0 32 ............................ TTCCCGTCAGCTCCACGAAACGGAGCCCATAA 161766 28 100.0 32 ............................ TGGCCGCCGCGAACATCCTCCCGGATGAAACT 161826 28 100.0 32 ............................ CGAGTGGGCACGAAAACAGGATATGTACGTAT 161886 28 100.0 33 ............................ CATGCTTATAAAGCCTCTTGTCGTCAAAATCCA 161947 28 100.0 32 ............................ TCCAAAAACGGTATCCGCTATCCGTTCATTAA 162007 28 100.0 32 ............................ ACGCAGCGCGAGCCAATTCCTCCTGTTTCCTT 162067 28 100.0 32 ............................ AAGCGCCTGGCGGGCGCAGAATTCATCACTGC 162127 28 100.0 33 ............................ ATTCTGTATCAGCCGGATAAGTATCACCTGGAA 162188 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 162248 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTTCTCGCACC C [162272] 162308 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.8 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGTGGGTGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTCAGAGAAGATTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGATTAACCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //