Array 1 1783493-1786144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065027.1 Actinomyces trachealis strain zg-993 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1783493 28 100.0 33 ............................ CAGGGGCTCCTGGCGCCGGGTGGTCGTGGTGGT 1783554 28 100.0 33 ............................ GTGATGTGTTCACCCGCGAGTGGCCGGTGGTCA 1783615 28 100.0 33 ............................ CCACAAAGCTCTAAATTGAAAGCGAGTTCATTA 1783676 28 100.0 33 ............................ CAGAACAGCTAATGCGTTCGAGACCAGGTATTA 1783737 28 100.0 33 ............................ CAAAGACGGATGAACCATAAATACTTCTCCTTT 1783798 28 100.0 33 ............................ GGAGAAGATGATGGCACGACACGTCGCACTCCA 1783859 28 100.0 33 ............................ CGCCTCGTCAGCGAGGAGGACCCTCATCACGGC 1783920 28 100.0 33 ............................ CCACTCCGACGACGGAACGACCCTGGTGCAGCT 1783981 28 100.0 33 ............................ GGAAGAACCGTCAGGATAGGACCCTATATAAAT 1784042 28 100.0 33 ............................ CTGCCCGCCAGGAGGCTGACCAGTGTCGGTGAC 1784103 28 100.0 33 ............................ CCGCCTCAAGGGCCAGCGCACTCCGGCGCAGGC 1784164 28 100.0 33 ............................ GAGTATGCTAGCGATCCCGATGCCGTTGTTCCC 1784225 28 100.0 33 ............................ TGACCAGGCGGACCAGCGGTCGGTCAACGAGAC 1784286 28 100.0 33 ............................ CAAGACCTCATCCAGGCGGAGGGTCACCTTCCG 1784347 28 100.0 33 ............................ CCGGGTTTGTCATCTCTAGTCCTTCCATTGAGG 1784408 28 100.0 33 ............................ AGGTCCTTCTCTCGGCCGTCTTCGCACGCAACG 1784469 28 100.0 33 ............................ GCCCTCGCCTCATGAGCGACTGGAACTTGGGGT 1784530 28 100.0 33 ............................ CACGTTAGCGGGCTGCTTCTGGTAGTGGTGGGG 1784591 28 100.0 33 ............................ CGCGCCGACCTCGATCATCTGGGATTTAATCTT 1784652 28 100.0 33 ............................ CACCCAGGCCCTCCTCAGCGCGGCGCTACAGCG 1784713 28 100.0 33 ............................ GACGAACTGGGCGGCGTTGGCGCGGATCGTGCG 1784774 28 100.0 33 ............................ CGCCAGCGTTCGGCGAAACGCTGGCGTTCTCCA 1784835 28 100.0 33 ............................ GCGGGCGACGGCGTCGGCCCAGGCGGTGGGTAC 1784896 28 100.0 33 ............................ GTACTACCGCCTCGTTTTGGTCGACTCCGGCAA 1784957 28 100.0 33 ............................ TGAGGATTTAATTTCTAATGGATCCGGGTGCCG 1785018 28 100.0 33 ............................ TGCTGGCCAGCGAGGTCCTCTCCCTCAATGACC 1785079 28 100.0 34 ............................ CAGCACAGGAGCCGCCTTGGCGAAGCGGTCGTTG 1785141 28 100.0 33 ............................ GTCTTGCCCCGCCTGCACTTTCGTCCAGGTTTT 1785202 28 100.0 33 ............................ CGAGCCAGTGATAACCAGCTTGACCTCACCCGG 1785263 28 100.0 33 ............................ GCGCCGCTTCTCCTCGGTCATCATCGACGAGCT 1785324 28 100.0 33 ............................ CTCAGTGTTGCCCGTGTGCGACTCCAGCACCTC 1785385 28 100.0 33 ............................ CGGGCCGTCAGGGTCCATCAGCACCGCCATGTG 1785446 28 100.0 33 ............................ GGCGGCGCCGATGGAGTCTCCGAGGGATGCGAT 1785507 28 100.0 33 ............................ CACCGCTGGCGGCTACGCCACCGGCGGATACCT 1785568 28 100.0 33 ............................ GGACCGGGGAGCCTAGAGGGCCCGTGTGCAACG 1785629 28 100.0 33 ............................ GGTCCAACTGCACGGTGTACTCGACCTTCTGAC 1785690 28 100.0 33 ............................ GGCGCCCGACGCGGTGGCCTCGGACGTGAACAA 1785751 28 100.0 33 ............................ CCCTGCCCAGGACCAGTTGTCGCCCAGGCCGAA 1785812 28 100.0 33 ............................ CTACGTCGGCTATCATTCGCACCACGGGTTCAC 1785873 28 100.0 33 ............................ CTCAAAACCGGGGTCATCTGCCCGGATCACGGA 1785934 28 100.0 33 ............................ CCGGCGCTGTGATACCTGATCCACAGTCATCGC 1785995 28 100.0 33 ............................ CGAGACGCTGCACGTTGATGGCGGCGATCTTGT 1786056 28 100.0 33 ............................ GCGCATCCCCGCTGCTGTGGCCCCGGACATTTG 1786117 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 44 28 100.0 33 GTCGACCCCGCACACGCGGGGATTACCC # Left flank : GGTTGTGGCAGGTGGCGCCAACTACGCCGAGGAGGAGGCTGGCGGATGGTAGTGCTGGTGCTTTCCGCGGCCCCGGCCTCCTTGCGGGGCGCCTTGACCAGGTGGCTGATGGAGGTCTCCCCGGGGGTGTTCGTCGGGCACCTGTCGGCCCGGGTCCGTACACAGCTGTGGGACCTGGTGGGTACCTATATCGGTGATGGGCGCGCGCTGCTGATCTGGTCCACACGCGGTGAGCAGCGGTTTGCCGTGAAGTCCTTGGGGCACGAGAAGGAGCCTGTTGATATGGAGGGTTGCCTGGTGATGCGTACCCCTTACGCCCACCTACCAGGCGGTCAGACTCCGCGGGAGATCGGGGCGGGGAGGGCCGCTCCTGAGTCCTGGTCCCTGGCGGCACGGCGACGCCGGTACCGCAGCTACGCCGAGCGGGCCCTAGGTCAGCAGTGAAGGAAACTGCCTGAGGTATTATGTCCTCAGCGTTGGGATTCCGCCGATCGCCAAGT # Right flank : CCACCACTGGCCAGAAGCCCAGCGGATCGCTCGACTTCTGGGAGAAGGCCGAGCGAGCTCTGCTGACGGCCCTGGTGCCCTTCGCATGGTTCAGCAAAGGCAGGCAGGGAACCCTCCTCGACGTCGTCGACATGCTGGCCGACATGAGCGCCTCCGAGCAGGACGAGAACGCCATGAGCAAGACCGATGCCCTCTTCGTGGCCACGCAGGAGGAGATCGACGACTACGACGCCAACCCGGACGGCTACGACTCCGAGGCCGCCGCCATGCTTGAGGGACTGCGGTTCAGCTGCACCCAGTACCACGTCTACACGCAGGGAGCGGGGGAGACCAAGAAGTCGATCATCATCTCCCTGGGCGTGCGCCTGGCACCCCTGCACATGTCACCTGTGCGCCGACTCCTGGCCTCCGACACCATCCGGGCCGACGCCCTGGGCTCCGAGCGCACCGCCCTGTTCCTGGTCGTACCCGACACGCACCAGGCCTTTAACTTCCTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCACACGCGGGGATTACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 2482823-2482000 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065027.1 Actinomyces trachealis strain zg-993 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2482822 28 100.0 33 ............................ CGTTTCCGTCTGGGAGGTGACGCCCACAATGTC 2482761 28 100.0 33 ............................ CGTGACCCTTTTTGGCGACCTGGGCTCCGGGAA 2482700 28 100.0 33 ............................ GGGTGACGGGTCTTCCAACTCCCTCACCGGCAT 2482639 28 100.0 33 ............................ CAGGTCTGCCTGGATGAGGCGCTCGTCGTCGCG 2482578 28 100.0 33 ............................ CACCAGGCTGTTTGTCATGGAGTCTCCGTCTCC 2482517 28 100.0 33 ............................ GCGCGCCAACACCACCGGCACCCGCACAGGAGC 2482456 28 100.0 33 ............................ CCGCACGTCCTGGTCTTTCTGCTTCGCCGTCCC 2482395 28 100.0 34 ............................ GACAGCGCTCCGCCTGACACTGCCACAGCCAACC 2482333 28 100.0 33 ............................ GTAGTGGCGGAGTTGGTGCGCGGTGGCATCGAC 2482272 28 100.0 33 ............................ GGGACTGGCGGTATACCTGGAGCAGTCGCGTGA 2482211 28 100.0 33 ............................ CGCGCATCACCTGGAGAGGGTGTATCTGCCGTC 2482150 28 100.0 33 ............................ GGCTCGCGATCTGAGCAACGACGAGACCGTGCG 2482089 28 100.0 33 ............................ ACGCTTCCCGCACTCGTGGCACAGCAGCCCGTC 2482028 27 92.9 0 .......................-...C | CG [2482005] ========== ====== ====== ====== ============================ ================================== ================== 14 28 99.5 33 GTCGGCCCCACGTGCGTGGGGGTAGAGG # Left flank : GTACTGGGCCAGGAAGGTCGGGGCCGCCTGGAGCGGCAGGTGCTGCGCGCTGTGCTGGTGCGCGGTGCTCAGCCTGCCAGGGAGATTCCTTTGGCTGTGCGGGCGGGCGTTACCCAGGTGATCGCCTGTGAGCCGCGGGTGATGACCTCCTTGCCGCGTCTGATTAGGGCCATGACGGCGGTTTCTAGTACCTGGACGAGCCTGGTGCCCGTACGCCGAGACCCAGGCCAGCTCCGTGAAGAACTGGAGGCCTTGGCAGCCCGTCACCAAGTGCGCCTGGTAGATGCAGGACTGCACCGGCACGCCTGCGCTGAGGTTGGGGTGACCGCAGGCTGTGACAGTGGGGCGCGGCATGTGACACTACGCTTTGATGCGGGGGTAGCTGGCCCGGTGGTGCTTGGCGGTGTAATGATGTCCCCGATGGGTGCATCCGGGTTGGCAGTGAATCCAAAACGCCGTTCCGCCCCGCGCAACCGTTGAAATACAGCGGCTGCCGAAGA # Right flank : ACGGGGCAGATTCGCGGAATTGCAACGTTTCTCTGAGCTGACTGCGCCAGCGTTACTCTAAGTGCTGCATTTCCTGACATGCTTCCCCGGGCCCTCCCCGGCTTAGTACCCCACAGGCACTACTGGCCACCTCGACACCCGAGCCCGCGTTCGACACCCTGGTTGCCGCAACTGGGGTGTCGAGGCCAGGTTCAGGTGTCGAACAAGCTCAGCCGCCGATGCTGCACGCCACGCGGACCACCCACCCTGCTGCCCGCGCCCCATAGCAGGAAACCGCTCTGCTCCTCCGCCAGTGACCAGTTTCCTCGGAACGGCAAGCGTCAACGACGCCGCGCCAGCACCGCTGCCGCCACCAGCAGACCGCCGATAGCCGCTACCAGCCACCAAGGAACCAGGCCTGCGCGTGCCAGTACCAGGTCCTCCAGCTGGGCTAGCCGCTGCACCGACAGCAGCCCCCCACCCAGGCCCTGCGGCCCGACCGTCACCATCAACAGCCCTAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCACGTGCGTGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //