Array 1 147989-151904 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNNH01000001.1 Nitrosomonas communis strain Nm110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 147989 37 100.0 36 ..................................... AAAGCCTACTGCATCGATGAGACGAAGCGATAAGAA 148062 37 100.0 35 ..................................... GGCGTAGCTCCCGGACAGTCTATCCCGTTTGTGTT 148134 37 100.0 37 ..................................... TACCTTTTATCTGACGCGGATCGCCTGTCTGTGGTGT 148208 37 100.0 34 ..................................... AGCGCTGGTTTGGTATTGAAATACTTGGCCATGA 148279 37 100.0 34 ..................................... CTGCGCGGCGGCTTGCTGAGTGCGGTTGGCTTAC 148350 37 100.0 36 ..................................... TTGGCAGAGCACAAGCATCAAAATACAGCCGTGGAT 148423 37 100.0 35 ..................................... TATTAGAATATTGATTGTCATGGCGATCGATAGAG 148495 37 100.0 34 ..................................... GCCTGATGTAAGCTTAAATCCTTGTGATCCAGCA 148566 37 100.0 37 ..................................... GTAATACTTCGGTGTCAGCTTTCCAGCGGAATCGCGC 148640 37 100.0 34 ..................................... ACTTGCCAGCGCTTTGCCATCTTGCCCTGGCTGC 148711 37 100.0 35 ..................................... GCCGCTACCAACAGTTACCTTTTTTCGCACAGCGC 148783 37 100.0 36 ..................................... CTCTTGTGGGTTTTCCGGTTATGCGACCGATGCGCT 148856 37 100.0 35 ..................................... TACCAGGCTCCCAAATGGTTGCCTCGGTTCCAGAG 148928 37 100.0 33 ..................................... ACCTCATCGCCATAAACCGGGATGATCGGAATA 148998 37 100.0 34 ..................................... ATCGCTGGCACGGGCGAAACTGATGCAAGCGGTA 149069 37 100.0 37 ..................................... TCATCAGTACGGAATGGTGCTTAACAGTACGACAATG 149143 37 100.0 34 ..................................... ATCTCGCACCTTTATAAAGTGCGGTCTTGTTCCG 149214 37 100.0 35 ..................................... CCGATCAGCCAGGTAATTAGCATAGGCCTGCTCCG 149286 37 100.0 35 ..................................... TGCTGTTGCTTTGTTTGTTGTGCCCTTCTTACGAC 149358 37 100.0 35 ..................................... CTCGTTTATTTAACGCTGCAAAGATTTGCTCTAAG 149430 37 100.0 36 ..................................... CAAATGCTGGGCGGCAAACAGGATAACGGATCGCAG 149503 37 100.0 34 ..................................... TGTGCAAACGATCAGCGGCAATGATATCGAGGGC 149574 37 100.0 35 ..................................... ACCGATAACACGGCAGCAAGCGAACACAGTAGAGA 149646 37 100.0 35 ..................................... AATATCTAAAACTTTCTTTTTGCGCTCATATAAGT 149718 37 100.0 36 ..................................... ATGATCTCCACCTGCATGGACGGAATGACAATGGCT 149791 37 100.0 34 ..................................... GCGCCATTCGTAATGGTTGCCGTAACCGTATCCG 149862 37 100.0 34 ..................................... ACCGGCATAGGCAGTGAAGGCCACGTAGCCATAA 149933 37 100.0 35 ..................................... ATGTTTATGGCCACGAGAAACGCCCACGATTGAGA 150005 37 100.0 34 ..................................... TAGGTTTGGCGGAAACGGCGGAGGAACCGGCGTG 150076 37 100.0 34 ..................................... AGCCGGAAATCTGCCTTTTGTCATAGAAAAACGT 150147 37 100.0 34 ..................................... ACAGCAAAAGCAGTAAAGCAGTATTGAAGAACAG 150218 37 100.0 34 ..................................... TTCCCTTTAGCGCCGCGGAAATCTTTGCTGCATG 150289 37 100.0 34 ..................................... AATGTTGCTGGTTTGCGTGGATTAGCCACTTAAA 150360 37 100.0 36 ..................................... TACCCAGACCCGCCCATGACATTGAGCCCAACCTAT 150433 37 100.0 35 ..................................... CATAGGGACGGATATTTGTACCCTGCTGACAATTA 150505 37 100.0 35 ..................................... CAAAAGCAGTCCCACCCAATTTAAAACGTAATGTT 150577 37 100.0 35 ..................................... AAAAGCCTGGCACAAGACCGCAAAGAAGAGGCGAA 150649 37 100.0 35 ..................................... CAGAGTCGTTTAAATTGCCGCCATTGCAATCAGTA 150721 37 100.0 34 ..................................... CCCACCCAGAAAACGCACTTTGCTCAATTGAAAT 150792 37 100.0 34 ..................................... CCTTCCGAAGGGATCAACTGGATATGGCGACCAG 150863 37 100.0 34 ..................................... AACTACACAATACGATTAACAAGAGCCTTTAGTT 150934 37 100.0 35 ..................................... AACTGGTCGGGGTACATCAAATAATCGGAATGGTG 151006 37 100.0 35 ..................................... GCATTAGTTTCCAGCGCCCCCAACTGTGCAACCAC 151078 37 100.0 34 ..................................... TTCCTGCCTGGCTCCCAGCACACCCATTGCGGCT 151149 37 100.0 35 ..................................... TTATGTGGGTTTTGATGCTTAACGAAATTGTTAAC 151221 37 100.0 35 ..................................... AGATATTCCCCGGCAATCTCGGCCTGTCTTTTAAA 151293 37 100.0 35 ..................................... ATCCAATGGCACATGATTACTAGCTATTGATGCCG 151365 37 100.0 36 ..................................... ACATTAGATTTTTGGGTGAAAAGCTTGGGGGCGGCT 151438 37 100.0 34 ..................................... TTTTATCACCTGGTTGCTAGATGTTTTTTTTGGT 151509 37 100.0 34 ..................................... TTTTGTCCGGCGATTGCTGCCTTAATAGTTTTTG 151580 37 100.0 36 ..................................... GGCACGGTTGCATACAAGAAAGGCAGTGAGCTGATC 151653 37 100.0 35 ..................................... CATGCTCAGAACGCGCTGTTTTGTCGATTGAAAAG 151725 37 100.0 35 ..................................... AATCATATCTTGATTATTTTTAAATCCCATCGCAG 151797 37 100.0 34 ..................................... ATGATTCGACTCCGCTCATCATAAATGTTTTAGA 151868 37 97.3 0 ...............................C..... | ========== ====== ====== ====== ===================================== ===================================== ================== 55 37 100.0 35 GTAGCGCCCAGCCAACGAGCTGGGCGAGGATTGAAAC # Left flank : GATTACATTCCTTTTTTGGTGAGGTAATGATGCTGATTATCATAACTTATGATGTTTCGACTGAAACCAGAGAAGGCCGGAGAAGACTAAGACGTGTTGCAAAAGTATGTGAAGGGCACGGACAACGCGTCCAGAAATCAGTATTTGAATGTAGAGTCAATCTAATGCAATTCGAGGAACTAGAACGACGACTATTGGCTGAGATTGATGAAAAAGAAGACAGTCTTCGTCTATATCGTTTGACGGAACCCTTTGAGTTACACGTGAAAGAGTATGGTAATGTCAAGTCGGTTGATTTTGATGGCCCTTTAATTGTCTGAGTTGCGCGAACGAAAAGTGATCGAAAAATTGCAGGATGTTCGCGCTGTTCCTAACTATATGAAACAAAAATATATTCTTGGAGTGAATCAGTTTATTTACCCTCTAAAAAAAATTGATAGATGCCAGTTCGCGCATTTACACCAATTTTTACTGATGTATGATGATGTTGTAGTTGTACT # Right flank : CAAATAGTGGCATCGCTCTTCCTTTGTTGTTAATAGTTTGGTAGAACTTACTATTCGATCAGCATAGGAGGGGCCGCCTATTCAGCCAAAGATTAAGTAAATGCTATTTAGGGGGATCAATCTTGATTACTTTTTCTTTTCCGCAATCAAGACAAATGAAGAAAGCATTTTTTGCGTCGAATCTTCCGAACGTTTCTTGGAATGTGCTTTCTATCCTTTTTAACTTTATCGATCCGCAAAGACTACATTGATAATCATGAGGATCTGGGCTATGAAGTTTTTCCATATTTTCAGTAAATGTGAAATTTTCGAGCTTAATATTCTGAATTTCCGATTCGAGATAGCAAATCATATCCGCTAAAGCGGAAACCTTTTTTCTGCATCCAGTAAGCTCTTTGTCATAAGCAACGAGCTGATCTTTCAAAAGCAGAAGCCGCTCTTTAATAATCAAAGTAGAGCCATTTTCATCAATAAGTTTTTCTATATTTTCGATGAGCATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCAGCCAACGAGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGCGCCCAGCGAACTGGCTGGGCGAGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.60,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //