Array 1 87303-86419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPQ010000017.1 Lactobacillus crispatus strain LB64 Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87302 29 100.0 32 ............................. CAAAGATTGATCAAGGCTAGATTCAAAGAAGG 87241 29 100.0 32 ............................. TAATAAAGTTTCACGCCATGCAATAAGCCGAG 87180 29 100.0 32 ............................. ATGTCGATTTCGTGCTTGATTGCGTCCCAATC 87119 29 100.0 32 ............................. AAGGCCTTCGAGTGGCAGCATACCGACATGTG 87058 29 96.6 32 ............................C GACATACTTGCCGGAATCTTTTGACTCCGAAA 86997 29 96.6 32 ............................C TCCAAATATCGTAAAGACCGCTCTGGGACAAG 86936 29 96.6 32 ............................C CGTAACCAGAGTTGCTATAGCTTTGATAAGCC 86875 29 100.0 32 ............................. CGTAATCTGAGTGCCAGATGGAATACTCCAGT 86814 29 93.1 32 ..........................GT. TGAAAGTGAGAGGATTGAGGGGTGATTATGAT 86753 29 100.0 32 ............................. AACCCATCGATGCAAGGTGATTGGGATTTAGA 86692 29 100.0 32 ............................. TACAATATAAGAAGTTTAATTAAATTAAGATG 86631 29 96.6 32 ............C................ ATGGGTGAAATCATCAAAAAAGGAGCTTAGAA 86570 29 100.0 32 ............................. ATCTAAATTTAGTAGGATATGCTCAGCCCATA 86509 29 96.6 32 ........................C.... ATGCAGAGTGGCGTGCATGTCATGATTACAGG 86448 29 82.8 0 ..G..........A...........AA.A | C [86423] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.3 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCAAGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119969-118475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPQ010000017.1 Lactobacillus crispatus strain LB64 Contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119968 29 96.6 32 ............................C TTTCATACTGATATTAGCGGCATCGCTTAAAG 119907 29 100.0 32 ............................. ATTATCTGTATTACATGAAACAGCTTCAAACG 119846 29 100.0 32 ............................. AATCAGTCTGCTAATGATGCTGAAATTGCTAA 119785 29 100.0 32 ............................. CTCTACAAATACTTGGCGAAGATATATGAAGA 119724 29 100.0 32 ............................. CTAGCGACCCTTTAGGGGCGCTTAGCCGATAG 119663 29 100.0 32 ............................. AAAGTTGGCTTTGCGTTTGCGTAACCAATCAA 119602 29 100.0 32 ............................. GAAGCCAGTAGTTCAACTGTTGAAGCACGATA 119541 29 96.6 32 ............................C TACAAGAGACACCACGGTGACAATATGGATTT 119480 29 100.0 32 ............................. TTACCTAGCATTTTTCTAAAGCATTGCAAAGT 119419 29 100.0 32 ............................. CATGAAAAGTCAGAAGGCTTTGACAACCAGCT 119358 29 100.0 32 ............................. TACCTGCTGATTACCTAAATTTTCAAGCCAAG 119297 29 100.0 32 ............................. TCAAAGTGTGCTTCACCAGATTGCTGATAAGT 119236 29 100.0 32 ............................. GGTTGGGCGTTTTGTGCCTCATCGCTTAAAGT 119175 29 100.0 32 ............................. GATTAAAGGTATTGAAACAGCTGATTTTTCTA 119114 29 96.6 32 ............................C CTGCTGGTCTTTTTCTTTTCGGCGGTCAATCG 119053 29 96.6 32 ............................C TAATGCAATGATCATGGCAGATATAGAAGAAA 118992 29 100.0 32 ............................. CCAAACGCTTAGGATTTGCTAGCGATAAAACT 118931 29 100.0 32 ............................. TAGTAAATAGCGCGGATCCGTGATTGAAAATG 118870 29 96.6 32 ............................C ACAAAACGATCCTTGAAGCATATTACATTCGG 118809 29 100.0 32 ............................. TTTGCTCAAGATAGCGAAAATGAGGTTTTTAA 118748 29 96.6 32 ............................C ATAAAATGGCAGGGTTAACCTGGATAGATAAA 118687 29 100.0 32 ............................. ACCATGCTTCAAGCGCTATTCATACTATTACC 118626 29 96.6 32 ............................C ACGATATACGCGCGGTTGCCCGTCACATATAC 118565 29 100.0 32 ............................. AACTGATTTAGTGGGTGCAGTTCTGGATTGAG 118504 29 82.8 0 ...........AC....T......T.A.. | A [118483] ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGACTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTTCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGTACTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATAGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //