Array 1 249321-248315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNX01000020.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N51288 N51288_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249320 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 249259 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 249198 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 249137 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 249076 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 249015 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 248954 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 248893 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 248832 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 248771 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 248710 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 248649 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 248588 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 248527 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 248466 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 248405 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 248344 29 93.1 0 A...........T................ | A [248317] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 88290-89355 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNX01000025.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N51288 N51288_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88290 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 88351 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 88412 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 88473 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 88534 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 88595 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 88656 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 88717 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 88778 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 88840 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 88901 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 88962 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 89023 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 89084 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 89145 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 89206 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 89267 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 89328 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105491-105946 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNX01000025.1 Salmonella enterica subsp. enterica serovar Montevideo strain CVM N51288 N51288_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105491 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 105552 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 105613 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 105674 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 105735 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 105796 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 105857 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 105918 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : ACCAAAGCTCGATATCAGTCAATTATGGCCAGGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //