Array 1 31630-30747 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVL01000056.1 Azoarcus indigens strain VB32 NODE_56_length_31756_cov_66.1837_ID_8566, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 31629 32 100.0 35 ................................ CGTCGTACGCCTCCGCGCCGGCCCCGACCGCCACC 31562 32 100.0 34 ................................ GTGTTCGGCCGCTCGAAGCCCGCCGCGCCCAGCG 31496 32 100.0 36 ................................ ATGTACGCCTCCTGGCGTGTCAGCCCCTTCGAAGTA 31428 32 100.0 36 ................................ GTTCTTGATCAGTTGGATTTCGAAATTCCGATGGGG 31360 32 100.0 35 ................................ TTCGAGAACAGAGGCGAATGATTACTTCGGCTGGG 31293 32 100.0 35 ................................ CGGCGCAAAGGGCGTCGGTCTCCCCCACGGTGCTG 31226 32 96.9 35 .....A.......................... AGCCCGACCGCATCCGGCCTGAACTGCTTGACCAG 31159 32 100.0 35 ................................ AGGCCGAGGGGTATGCGCCGCTGATGCGATTCGGT 31092 32 100.0 37 ................................ GGTGCCGGCGTCGCCCCCGACGGCACGCCCTGGGCGC 31023 32 100.0 34 ................................ CGGCGCATACAGCTCAATAGGCGCATAGCCGCCC 30957 32 100.0 35 ................................ ACCGTCCCCGACGTCTGCCCTTCCGGACACGACTC 30890 32 100.0 13 ................................ GGCCTCGAAAGGC Deletion [30846] 30845 31 87.5 35 C..A..A..-...................... CACAGACCGGCCTCGCCCATGAAGAGCGGGTTCAT A [30842] 30778 32 90.6 0 ..........C...T......C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.2 34 GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Left flank : CACTCCGCAAACAACACGGCGCACAGCATTCACCTCAATGTGCTTCGTTTCCAACGATGCCCTCCTTGCGAGCGAGGGGGGCAATTCCTCGTGTCGCTAGGGGGTCAATTTACGATGTCGCCTGAC # Right flank : CGCTTGATGCGCTCGCGCTCGCGCAAATTGCGCCACGTTCTTCGATGCACAGCTCGCTCCCCGGCCCAGCCGCAGCAGTTCTGCCGGCTTGGCCGGGGAAAGCGGCCTCAGGTTTTGAGAGCCTTCTTGCCGCTCTCCCCCCAGAAGCGCTCCATTGCGATGTAGGTGTAGGAGGCGCTCCATCCGATCAGGAGCAGGCCGTTCAGGGCTTCCACGCCGGCCATCAGGCGCAGGTCTCCCTTGGGCACCACGTCGCCGTAACCCAGTGAGGTGTAGGTTTCGGCGGAGAAATACAGCGAGACGTCGAAAGAGAAACGGCCCGCATCGCCGAGATGGCCGAGTTTTCCGAAGCGGGCCAGCAGGTAGAGCGTGGCGGCGTACAGCAGTATTTCCAGCGTGTGGGCGAGAAAGGCGACGAAGATCACGATGACCAGCCGGGCCCGGGCCCGCACCGGCGCCCTGGACAGGTGGCGGTTCATCAGGCCGAGCACCTCGTAGTG # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3151-4989 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVL01000102.1 Azoarcus indigens strain VB32 NODE_102_length_5156_cov_94.8171_ID_8658, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3151 32 100.0 34 ................................ CCTGCTGGGCGAGTTGGGAGTATGTCCGGGCTTA 3217 32 100.0 34 ................................ GAGTGCGCACCAGAGGAACGGCGGACACGACGAA 3283 32 100.0 35 ................................ GAGGCCGAAATGGTGCCCATGGACTATGCGGACGG 3350 32 100.0 35 ................................ GTCATCGCCGCCCACCTCTCCGGCGTCGTACCCAT 3417 32 100.0 35 ................................ CGGCGTCTTCGGGGCATCAATTGGACTATCCGGCT 3484 32 100.0 36 ................................ GCTGCTGGTGATGATCCGCGCGCACGAGGAAAGCGG 3552 32 100.0 36 ................................ GGTGAGGTCCGCGTACTGAATGGTGAACCGCCGCAC 3620 32 100.0 35 ................................ GGCCTGGCCGAGCAAGCGGGGTGGGTTTCTCCCTG 3687 32 100.0 35 ................................ AAGGAGCCCCCGCCGGTTCCGCGGGAGTTGCGGCC 3754 32 100.0 35 ................................ CCAGTCTGGCACCAGCTCGCGGACGCTCCAGGGGT 3821 32 100.0 35 ................................ GGGTTTACTGCGTACCTGGTGGCCGACATGGCGGT 3888 32 100.0 36 ................................ CTGCTGGGCTGGGGTTTGCTCCGCCTGATCCTGCCT 3956 32 100.0 36 ................................ CGCTTCCACCGTGAGGCGCCCCGCGGCAAGCTTGGT 4024 32 100.0 33 ................................ GCCCGCCTGCTGGACCGCACTGCCGCGGTCCAG 4089 32 100.0 35 ................................ AGCAAGCAGGTGATCGACACCGCGGACCGTCTCGA 4156 32 100.0 35 ................................ ATCTTTGGCGACATCGGCGAGAGCTGGTGGGAAGA 4223 32 100.0 34 ................................ CAGGTCATCGCCGTTATCGTCGATGCGGAGGTAT 4289 32 100.0 34 ................................ CTGCCGTCTCGGGCGCTGCAGATCGCATCACGCT 4355 32 100.0 36 ................................ CTGCCGAGTGCTTCGGCGATTTCCGCGGCAGTGCGG 4423 32 96.9 35 ...........T.................... GGCCGGAACATGCCTATCCCTGTGCGCGAGGACGG 4490 32 100.0 34 ................................ GTGAGCGTGCTACTGCTCAGCAGATACCGCTCTG 4556 32 100.0 34 ................................ CCAATACCCCATCCGAACAAAATGTCCCATCCGC 4622 32 100.0 36 ................................ ACGGATGGGCTGGATGGCATGGTGGCCGGCTTGGGC 4690 32 100.0 36 ................................ GCGCGGCGGCGTCCACGCCGGATAGCCCATCCACCA 4758 32 100.0 32 ................................ GTGGGTACCGCCTACGCACAGCGCGTGGTCGC 4822 32 100.0 35 ................................ GCGCGATGGACGATCACCCGCACGCCCAGGCGGTC 4889 32 100.0 37 ................................ GCCTGCCGCTGGCCCAGAGGTGGAAACCATGGGGCAC 4958 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 28 32 99.9 35 GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Left flank : CGCCTCACCCGCGCCTGCGTGGTGCATATCGTCGGCATCGTCGAAGGCTCGCCGGTGGATCGCATCACCGGCCACAACCTCGCCATCACCGGCAACCGCGAACTCTTCGCCAAGATCCAGCCGCTGCGCGACGCCTACGAGGGCGTGTTCCGCAACCTCGTCAACGCCCTGCCCGTCGCCCCCGGCACCGATCTCTCCCTGCTCCGCCTCTTCCTCCTGGGCGGCATGAACTGGGTCTACCTCTGGTACCACCAGGGCCGCCGCAGCCCGGAAGAAATCGCCCACGCCATGGTGGACATGCTGCGCCGCGGCGTGCAGGCCTGAGCGCGAACCCCAAGCTGCCGGGAAAACCCCGGGAGGTTCGCGTTTCCTCAAGCCACTGATCGGAAACCGCTTTTTCCTGGCAGTCCAATCCACCCGGATCGAACCACCGCTTTTTCTGCACGGTTCGCGGACAAAGGCACGCCCAGGCTGAGGAATCAGCGTGTTACGGTGGCAGA # Right flank : GGCTGGGGCATCAAGGCAAATGCATGGATGCTGGGGTCGCTGTCAAGCGACACGAGGATTTAACCCCCTGACGACATCTGGAATTGACCCCCTGGGTTAATCAACTCTCCGCGGTGATCGGGGTGGGGGCCGCGGCCTTCTGCAGAAGTCCGCTGCGCCGCTTGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCTCGCGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCCTCGCGGACGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 148-1123 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVL01000069.1 Azoarcus indigens strain VB32 NODE_69_length_20775_cov_72.134_ID_8592, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 148 32 100.0 35 ................................ CAACCCGGCATGATCATCGACGACCTTGCCCCCGG 215 32 100.0 36 ................................ GAGCAGCGCGGGGTAGGCCACGAAATCCTCCCCCAG 283 32 100.0 35 ................................ GATCTCGCGCTGGAGGCTGAGGTAGTACTCCTCTG 350 32 100.0 35 ................................ AAGGCGGTGGCGGCCATCTACGGGCGCTACGGCCT 417 32 100.0 38 ................................ GACGCAGTACCGGACGAGATCGCGGAAGCTATGGGCAA 487 32 100.0 36 ................................ GCCTACTGCTCGGCCTGGGAGTGCGAAACCAAGGAA 555 32 100.0 35 ................................ TCTCGCAGCCGAATCAGATCGGACAGCGGGTTGTC 622 32 100.0 34 ................................ GTCCTCGCGCGGCTGGGTAAGCCTGCAGTCCCAT 688 32 100.0 35 ................................ GCCGGCGCCGTGCCCATCGGCTACGCCCGCACCGC 755 32 100.0 36 ................................ ACCGGCGGCGCCAGCCTCACTTACATGGCCATCGGC 823 32 100.0 37 ................................ GTGCCCGATTTGGGCGAGGTAATCCGCCACGCGGGTG 892 32 100.0 36 ................................ GATGAGCTGGTGACGGCGCCTGGCCAGGTGACGAAG 960 32 100.0 33 ................................ CGTAACAACCTGTCCAAACCGCTGCAGGTACTG 1025 32 100.0 36 ................................ TCCCGCTGCGGCACCTCACCGCCCGCGCCAGCGTGC 1093 31 75.0 0 .....................-.CC..TCCTT | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 98.3 36 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : TGACAAGCGGCGCAGCGGACTTCTGCAGAAGGCCGCGGCCCCCACCCCGATCACCGCGGAGAGTTGATTAACCCAGGGGGTCAATTCCAGATGTCGTCAGGGGGTTAAATCCTCGTGTCGCTTGACAACCACGCTCCAGCCCGGCGGG # Right flank : TCCATTCGCCGAGCTGAGGTTCTGCGCGCATTGATGCAGAACCATCGTCACAGGGCTTGCCCTCTGCCGGCCCAGCCTCAGTCCCGCAACTCCCGCCCCGTCAGTTTCAGGAACACGTCCTCCAGGTTCGCCGGCCGGTGCAGGTAGCGCAGGCCTTGTTGCTCGGCGAGGTGGGCGAGCAGGGGGGCGGGGTCGTGGACGTAGCAGAAGGCGGTTTCGCCGCTGATTTCGTAGCGGTGGGAGAGGGCGGCGGCGTGGGTGTTGGCCCAGGCGGCGGCGCCGCTGGAGGTCGCGGTGTCGTGGCCGTTCCAGTCGCCGAAGACTTCGACGACTTGCGGTTCGATGTGGGCGGCGATGACCTCGCGCGGGCTGCCGGTGGTGAGCAGGCGGCCGGCGTCGAGGATGGCGAGTTGGTCGGAGAGGCGTTCGGCCTCGTCCATGAAGTGGGTGGTGAGGAGCACGGTGGTGCCACCGCGTATGAGTTGCTTGAGGCGGTCCCA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11812-14131 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVL01000082.1 Azoarcus indigens strain VB32 NODE_82_length_14283_cov_105.211_ID_8618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 11812 32 100.0 36 ................................ AAAACGACCGGCACCGGCGCGATGGCGCTTAGCGGA 11880 32 100.0 36 ................................ TCGATTACCTGGATCTCCACAACCTGGCGCGTGCTC 11948 32 100.0 34 ................................ TGCCCTTCCTCTATCATCCCCTGCAGACCGGCCC 12014 32 100.0 34 ................................ TTTTTCGGCCGCAATCCGACGGTAGAGCGTGCTC 12080 32 100.0 34 ................................ CTCCATAGAGCGGCACAAAACCGTTCCGCGGTAT 12146 32 100.0 36 ................................ AAGATCTATACCGGGGCTGAGGATCAAATGCCAGAC 12214 32 100.0 39 ................................ GGTGGTGATGTCCTGCAGCCGCTCGACGTCCACCATCAC 12285 32 100.0 36 ................................ CGCCACCAGGGCCGCCGCGCCGGCCAGGCGCTGGAC 12353 32 100.0 35 ................................ GTGATGGGCGAAAGCTGCTGCCCTTCCGTGATCAT 12420 32 100.0 35 ................................ CGCCTGCTGGGCGCAGGCCCAGCCCACCCAATCGC 12487 32 100.0 34 ................................ CTGAGCGAAGGCGAGCAGAGTCGCCCGGCTCGCC 12553 32 100.0 34 ................................ CGCCGCTCCGTCCAGCCTCCCGCCCGCCGTCCTC 12619 32 100.0 36 ................................ AGCCTGGAGAGCGCGGTCATAAATCCAGAGAGCAAG 12687 32 100.0 36 ................................ CTCCGCCAGTTGCACCCGTACCCTGGGCGCGAGGCC 12755 32 100.0 38 ................................ GGGAATATGATCCGTCAATGGCATACCGAATTAGGCAA 12825 32 100.0 34 ................................ GTCGGCCGTCATCACCACGGCAATTTCGGCGCTC 12891 32 100.0 35 ................................ CTGAGCAACGAGGAAATCCCCGTCGTCCTTGAAGA 12958 32 100.0 35 ................................ CGCCCAGGTCTGGCCGCCATCCACCGAGCGCAGGA 13025 32 100.0 36 ................................ GAAGGCGTAATTCCTGCGCCCGTGCTGGCAACGTAC 13093 32 100.0 36 ................................ TTGTTTTCGGGCTAAGCCCTAACTCATCCCAAGGGG 13161 32 100.0 37 ................................ GCCGAGTTGGCGCTGCGCGAAATGCTGGTCAAGGCGC 13230 32 100.0 35 ................................ TATCTCGTACGATTCGCTTGTCTCGCCCACCGGGA 13297 32 100.0 35 ................................ CCCATATTGCCCTCAATGCGGAGGCAATCAGTGGG 13364 32 100.0 36 ................................ TTTACCCGTGCGCCGATAAGCTCATCCAGGTAACAA 13432 32 100.0 35 ................................ ATCGCTGTACGGACTGCGGCCATCGCGGTGAAGCA 13499 32 100.0 36 ................................ ACTTCGGCCCAGGCGGAAATCTCCCGCACGGAGCCG 13567 32 100.0 36 ................................ GGTTTGTGCGGCGTCCGGTTGCGCGGCCGCCTGCGG 13635 32 100.0 35 ................................ CCACACGAAGGGCGGCCGGTGAAGAACACCTTCAG 13702 32 100.0 34 ................................ TCGCCGTGCTTGGCGTAGCTGTCGAGCAGCTCCA 13768 32 100.0 35 ................................ ACGTTGGAGCTCAAGCGCATCGACGAGAGCCGCAA 13835 32 100.0 35 ................................ GGCATCCAGGGCGCGCGCGTCGGCGCAGCGCTGTG 13902 32 100.0 33 ................................ GCGGTCAGTTTGGCGGATACCAAATCCACCGGC 13967 32 100.0 35 ................................ CAGATCGACAACTGACCCCCGGTTTGCGCCATGCC 14034 32 100.0 34 ................................ TTTCCTGGTGGCCCTCCGTACTGGGATGCGCGCC 14100 32 96.9 0 ................A............... | ========== ====== ====== ====== ================================ ======================================= ================== 35 32 99.9 35 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : CCCTTCCTGTGGAAGTGAGCCGCCACCATGATGGTCCTGGTGAGCTATGACGTAAGCACCCGCGAACCGGCCGGCGAGCGCCGCCTGCGCCGTGTCGCCAAGGCCTGCCGGGATTACGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAGGTCGACCCCGCGCAATGGACGGTGCTCAAGCACCGGCTGATGGAACTGATAGACCCGGCGCAAGACAGCCTGCGCTTCTACTACCTCGGCAAGAACTGGAAAACCAAGGTCGAACACATCGGCGCCAAGGCCGCACTCGACCTGAACGGTCCACTGGTTTTCTGACCGCCTCCGCGAACCCCTAGCTGCCGGGAAAAGTCCGGGAGGTTCGCGTTTTTCTATCCAGCTGACGTAGAAGAGATTTTCTGGATCTTGCCAAGTTCATAGGCATCTTGCAGGGGTTGTCCGTGCAGGTTCGCGGAATCCGGGCATATTTCCCTTGCCTGGCAAGGTGTTACCTTGGTGGC # Right flank : ATGAGCCTGGCGCCCGGCAGCCATCTGTCAGGCGACATCGTAAATTGACCCCCTAGCGACACGAGGAATTGCCCCCCTCGCTCGCAAGGAGGGCATCGTTGGAAACGAAGCACATTGAGGTGAATGCTGTGCGCCGTGTTGTTTGCGGAGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //