Array 1 18648-18354 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADO01000013.1 Xanthomonas translucens pv. poae strain CNC2-P4 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 18647 31 96.8 36 N.............................. CTTGCGGCGGGCGTAATTATTGGCGGGGTTGCTGTA 18580 31 100.0 34 ............................... ATGCACTAGCTTGTGGCATGCCTGGCACAGCCAG 18515 31 100.0 34 ............................... TAGCGCTTCTTCCCCCCCCTCCAAACATGAGGGG 18450 31 96.8 34 ....................C.......... GCGTTGGCAGTTCGTCGCGCTGGTGAGGTTTAAG 18385 31 87.1 0 .....T.........A.C.......C..... | G [18358] ========== ====== ====== ====== =============================== ==================================== ================== 5 31 96.1 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CTCAGCGAAGAAAAGGTTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTACACATACAGCTTTGAAGATGTCTTGCGTTACGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGGATCGACAGCTTCGCATTGCCGCACAGCTTGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGCTGTGTCCGCGCTGCCCTTGATACGGTTGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGAAACGGCCATGCTTGGCATCGCAAGGCAGGTAAACGTCGCGTCCTCACGGGCGCGTGGATTGAAACCTGCATGGAGTCGAAGTCCTAAACATCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGACTTGGCGACGCTGTGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTCCCTAGCGGGACGCAATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAACGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19655-18837 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADO01000013.1 Xanthomonas translucens pv. poae strain CNC2-P4 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 19654 31 100.0 35 ............................... AACGGTGCGTCCACCAGGGAAAACAGCTGGCTACC 19588 31 100.0 35 ............................... GCGTGCACGTTGTGGTCGAACTCGTAGCTGTTGTT 19522 31 100.0 35 ............................... GAAAACAACAATTGCTGGGCGATGGTCGAGGAGTC 19456 31 100.0 36 ............................... AAAGGAGCGGGACACGCTGCGGCGGCCATACGGCAG 19389 31 100.0 34 ............................... GGGTCTGCGGATGTGAACCGGCTCACTGGCGATT 19324 31 100.0 34 ............................... CGCAGTCCAGTTTCGGGCCGCTGTGTGATTGCTT 19259 31 100.0 35 ............................... CGATATCCCTGGAAGGGCAATACTTGCCGGACGGC 19193 31 100.0 34 ............................... AACTCCGCAGCGAAGCTCAGCGAAGAAAAGGTTG 19128 31 100.0 34 ............................... TACACATACAGCTTTGAAGATGTCTTGCGTTACG 19063 31 100.0 34 ............................... CGGATCGACAGCTTCGCATTGCCGCACAGCTTGG 18998 31 100.0 33 ............................... TTGCTGTGTCCGCGCTGCCCTTGATACGGTTGC 18934 31 100.0 36 ............................... GAAACGGCCATGCTTGGCATCGCAAGGCAGGTAAAC 18867 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 13 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATTGAAACTGACGGCCGTCCATCGAATGCTGACGCGTCACGGGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCGAAGTGGGCACCACTGCCTCAAACGGGACGGTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCGATCCGGACCTTATCACCGGCCATAGCGGCGACGCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGTCGTCGGGGAAACGGACGCGAACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CTGCATGGAGTCGAAGTCCTAAACATCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGTCCTCACGGGCGCGTGGATTGAAACCTTGCGGCGGGCGTAATTATTGGCGGGGTTGCTGTAGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGCACTAGCTTGTGGCATGCCTGGCACAGCCAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTAGCGCTTCTTCCCCCCCCTCCAAACATGAGGGGGTCGCGTCCTCACGGGCGCGCGGATTGAAACGCGTTGGCAGTTCGTCGCGCTGGTGAGGTTTAAGGTCGCTTCCTCACGGACCCGTGGATCGGAAACTGACTTGGCGACGCTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 23600-19948 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADO01000013.1 Xanthomonas translucens pv. poae strain CNC2-P4 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================================================================== ================== 23599 31 100.0 33 ............................... CCGTCTGCGGCACCTAATTCACAGCCGTACCTG 23535 31 100.0 36 ............................... AGCTGCTCGGAGTTCATCGCGGCGGATTACCTGGCG 23468 31 100.0 34 ............................... AACGTCATCAAGGCGGCCGGACACTTTTCCTATA 23403 31 100.0 41 ............................... TGCGGCGCGCCGTCGGCGGCGATTACAGCCNNNNNNNNNNA 23331 31 100.0 34 ............................... TCGTGCTCGGGGTGGTGCTCGTCCTTCGCCGCCG 23266 31 100.0 35 ............................... TTGCCGCCGCTGTATATCGCTGCCTTCGGTGCGGT 23200 31 100.0 36 ............................... TTATTAAGCGTTCAGCGCGCGGCCCGCGCCAAGGTC 23133 31 100.0 35 ............................... ATTTCCGCCGACCTCACAGGTAACGTAGGACCGCG 23067 31 100.0 34 ............................... ATAAGTAAGCGCGCTGCAGTACGTCCTCCGGAAA 23002 31 100.0 33 ............................... CGGAACGCCCACGCTTGCGGGCTGGGGTATCCT 22938 31 100.0 33 ............................... TCGTATCCGCTTTCGCGACGTCAGCGTTGGCAT 22874 31 100.0 35 ............................... TGCCGGATGATCGTGGAGACATTCTTAGCGTTAAG 22808 31 100.0 35 ............................... TTCGTGATGCCGCGATCCACCGCCCACAAATGTCC 22742 31 100.0 35 ............................... ATTGGTCGTGACGTGGTATTTGCAGACGCAGCACA 22676 31 100.0 35 ............................... GAGGAGTTCGGTGGCTTGTTCGCCAAGGGCCAGAA 22610 31 100.0 37 ............................... TTGAAGAAAGGTGCGCGGCAGCAGTGGGAGTCGCGGG 22542 31 100.0 33 ............................... AAGAACGACACGGGCAGCGCGAAAGACCTTGCG 22478 31 100.0 35 ............................... TTGACGTTAGGCGAGTCCGCAGAGCGCGCGGACAC 22412 31 100.0 35 ............................... AAGGGATTGCCGTGCTACGACTACGCCGCATCGAA 22346 31 100.0 35 ............................... AGCCGGCTGCGCACCGAGGAGCGGCACTTCGTGCA 22280 31 100.0 35 ............................... GTCGGCGCTAACGCGATTGTTGCCGCTCTGCTGCG 22214 31 100.0 34 ............................... GTGTTTTGCCGCTACCACTGATCCCGGCGAAGTT 22149 31 100.0 34 ............................... GCGGACACGTTCGGATGGCAGGAAATCACGATCA 22084 31 100.0 33 ............................... ATCGTGTGGCGCGTTGAATTCGTGATGACCACA 22020 31 100.0 35 ............................... ATCGCGACGGTGACCACGATTTCCGCTGTCGTCAA 21954 31 100.0 34 ............................... AGGGGCTTGGCGGCGGGTCCATGATCGGGCCAAA 21889 31 100.0 34 ............................... ACAAGCTAGAGGCGATTAAAGATGGCTGCATATT 21824 31 100.0 41 ............................... AGCTCGAAAAGCGAGTTATCGCCGCTCTCTCNNNNNNNNNN 21752 31 100.0 35 ............................... CCCTTCATCCTGCAGACCGGCGCATCGCCGATCCC 21686 31 100.0 36 ............................... CACCCATCGAGAACACGCCGGCACAGCCGGCAGGAG 21619 31 100.0 33 ............................... CACGCATGGGAGGCGTACTCCCTGTTTCGCCGT 21555 31 100.0 36 ............................... GAAACGATCCTGTCCGCAATTGTTGCGGATTTTGTC 21488 31 100.0 34 ............................... CGAGGGGCGCTATCGCAGGTCAGATTCAGTCTAT 21423 31 100.0 35 ............................... ACCCAGATGTTGGGCCAGATGGGGCCGGGCCTGCC 21357 31 100.0 37 ............................... TCCTGAGCAAGCCGAGGCGGCGGGCACGCGCACGCCG 21289 31 100.0 34 ............................... AGGTGCTCGGACTCTTCGAACTCCGGGACGAACC 21224 31 100.0 35 ............................... TCGAACTCGGAAGCGATCCCGATTTCCTCGTCGGC 21158 31 100.0 34 ............................... TCGCGCTGTGGAGGATAGGCTCGGATATACAATT 21093 31 100.0 43 ............................... TCGAAGAACGTAAAGCCCGCGAAGTCGCCGANNNNNNNNNNAG 21019 31 100.0 35 ............................... TTCCGGCATCTGGCGCAGAGTGTGCCGCCTCCCGC 20953 31 100.0 34 ............................... CTGTACCGAATGACGACGTACCCGATGCTGTTTC 20888 31 100.0 83 ............................... CTTGTAATACGACAGCGCCATCGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 20774 31 96.8 35 N.............................. CTTGCGCTTCGCGACCAGCTTGTCCAGCGCGAGGC 20708 31 100.0 43 ............................... ACGCCATGCGCTTCCGGCGCAGCAGCCAGNNNNNNNNNNCCGC 20634 31 100.0 34 ............................... CGCCTGCCTGATTTGCGTGGAGAATTCGTCCGCG 20569 31 100.0 33 ............................... GACTTATGGCGACGGTATTGATATCACGGTTAT 20505 31 100.0 35 ............................... AGGATGCACCTGGTCAACGATTACGTAACGGAAAT 20439 31 100.0 35 ............................... CTGACCCCGTGGGCGCCTGCAAAAGCACTCGGCGG 20373 31 100.0 36 ............................... GCGGATAGTGCTCCCGTGCCCTGCGCGTCTGCTATC 20306 31 100.0 34 ............................... ATCACGTTTACGCTTACGCCGTGGATTACTCGCA 20241 31 100.0 33 ............................... ATGTAGTGCGCGATGACCTTGGCGGTGGTGTTC 20177 31 100.0 35 ............................... TGACGGCCGTCCATCGAATGCTGACGCGTCACGGG 20111 31 100.0 35 ............................... CCGAAGTGGGCACCACTGCCTCAAACGGGACGGTG 20045 31 100.0 36 ............................... CGATCCGGACCTTATCACCGGCCATAGCGGCGACGC 19978 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================================================================== ================== 55 31 99.9 36 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CCGAATTCGATTGCGTCTCCTAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAACACCCATCAGCACTTATGCTCAGGGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACATGTTGACCTTAGCCGCCTTGCGCACGGCATCAACCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCACAGAGACCAGACGTAGGCCACGACCGGGAAGGTGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCCACGGTCACCTCACAGAAGGTCGCTGCCAGAGTCGCGTCCTCACGGGCGCGTGGATTGAAACGGTACTACCGCCGCCCCCAGGGATGCGACAGCAAGGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCGTAGATGACGCCAAGCACTGGATCGCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCGTCGTCGGGGAAACGGACGCGAACCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAACGGTGCGTCCACCAGGGAAAACAGCTGGCTACCGTCGCGTCCTCACGGGCGCGTGGATTGAAACGCGTGCACGTTGTGGTCGAACTCGTAGCTGTTGTTGTCGCGTCCTCACGGGCGCGTGGATTGAAACGAAAACAACAATTGCTGGGCGATGGTCGAGGAGTCGTCGCGTCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 24019-23724 **** Predicted by CRISPRDetect 2.4 *** >NZ_MADO01000013.1 Xanthomonas translucens pv. poae strain CNC2-P4 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 24018 31 100.0 37 ............................... ATGTTGACCTTAGCCGCCTTGCGCACGGCATCAACCG 23950 31 100.0 35 ............................... CACAGAGACCAGACGTAGGCCACGACCGGGAAGGT 23884 31 100.0 33 ............................... TCCACGGTCACCTCACAGAAGGTCGCTGCCAGA 23820 31 100.0 35 ............................... GGTACTACCGCCGCCCCCAGGGATGCGACAGCAAG 23754 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCGCCATGATGGTTTTGGTCAGCTACGATGTCAGCACGAGCTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCGGGCGTCGACAGCCTTCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTTGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCCGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTAAAAGAAAAATATCAACCTCTTCCACTTGCTGGCATGTCCGCGGAAGCCGAATTCGATTGCGTCTCCTAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CCGTAGATGACGCCAAGCACTGGATCGCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCGTCCTCACGGGCGCGTGGATTGAAACCCGTCTGCGGCACCTAATTCACAGCCGTACCTGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAGCTGCTCGGAGTTCATCGCGGCGGATTACCTGGCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACAACGTCATCAAGGCGGCCGGACACTTTTCCTATAGTCGCGTCCTCACGGGCGCGTGGATTGAAACTGCGGCGCGCCGTCGGCGGCGATTACAGCCNNNNNNNNNNAGTCGCGTCCTCACGGGCGCGTGGATTGAAACTCGTGCTCGGGGTGGTGCTCGTCCTTCGCCGCCGGTCGCGTCCTCACGGGCGCGTGGATTGAAACTTGCCGCCGCTG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //