Array 1 358-1944 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXL01000159.1 Pseudomonas aeruginosa strain VET-69 PA2_G7_NODE_435_length_1944_cov_15.7196_ID_869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 358 28 100.0 32 ............................ ATCACAGTCGATACGGCCCCTCGGCCCGTCCA 418 28 100.0 32 ............................ TTGGCGGAAGTGGATTGCTCACCATATAGCCG 478 28 100.0 32 ............................ ACCTCCCGCCTTCCTGGCCTTTAGCATGGCGT 538 28 100.0 32 ............................ ATGATGCCCAGCTTGATGGCCTGGACTACCTG 598 28 100.0 32 ............................ TTTCACGCCTGCCATTTGCTGAATTCCAAATC 658 28 100.0 32 ............................ TGGAAAAGGCCAAGGTCAGCCAGTCGGACATG 718 28 100.0 32 ............................ GCGCCAAGCGCCAACTGCGCAAATGCTGAAAA 778 28 100.0 32 ............................ TCGCTCAATCGCCGTCGCCGGGTCAACTGACG 838 28 100.0 32 ............................ CGGCAGAAAAACGGATCGGTCGCGACTTCGAA 898 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCTGGCTCAAACAC 958 28 100.0 32 ............................ TGCTCGATGAGGTAAGCAGCAAGCCGGCCCAT 1018 28 100.0 32 ............................ AGCTCACGCAGGAGCGACCAATACCGCTTGTT 1078 28 100.0 32 ............................ ACTTGCAGCGCCGCCGCGTCGTCTTGCATGCG 1138 28 100.0 33 ............................ TACCCGGACATTAGACGAAAACTGCGTTCCGGT 1199 28 100.0 32 ............................ ACCACCAGGCCCGCGGTATCACCCGTCTCGGC 1259 28 100.0 32 ............................ TGTTCGAACGCCACATCATGTACCGCCGTCTC 1319 28 100.0 32 ............................ TCCACAAACGCCACGGCGAAGGCCAGGATGCT 1379 28 100.0 32 ............................ CGACGTCTCCACCGGCGGCATCGGCATGGACG 1439 28 100.0 32 ............................ AGCATGACGACCGGCGCGGCGGCTGTTACCGC 1499 28 100.0 32 ............................ TTGTCGATCGACTCATACGGGAGATGGAGGAA 1559 28 96.4 32 .C.......................... GAGTACATGGTCGACCTGCCCTGGCGCTCCTC 1619 28 100.0 32 ............................ TTTGACGGTCGCTCCAGGGACAGCCCAAAGGC 1679 28 100.0 32 ............................ TCGCGGTGACGGGCATGACGGGCGCTGGCAAG 1739 28 100.0 32 ............................ ATCGCCGCACGGCTCGCGCGATCGTATGTACT 1799 28 100.0 32 ............................ AGCCGGCAACGGAAACATCGTGCTGGCCGCGC 1859 28 100.0 32 ............................ ATGAACACTGAACTTGCACCCGTTGAAATCTA 1919 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : | # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1224-536 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXL01000438.1 Pseudomonas aeruginosa strain VET-69 PA2_G7_NODE_464_length_1580_cov_15.3553_ID_927, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1223 28 100.0 32 ............................ AGGCAGTGATAGGCCCGCTGCATGGCGATGAT 1163 28 100.0 32 ............................ TGAGCGCGTCTGGACGACTGTCACCAACGAAA 1103 28 100.0 32 ............................ ATCGACCACGCCAAATTCACCGCAGTAACTGC 1043 28 100.0 32 ............................ ATCGTGCCGGACAGCAGCAGGATGCCCAGGAC 983 28 100.0 32 ............................ GTTCGAGCCTGGCTGCGTGCGGGCGAGTTCAA 923 28 100.0 32 ............................ CGATGCCGGTGCTCGACGGCCGGGGCATCCTC 863 28 100.0 32 ............................ TCTACAACGGCCCCGACTACACGCGGAACCTC 803 28 100.0 32 ............................ GGCAACGGCGGCCATCACGAACACGCGGCGGC 743 28 100.0 32 ............................ ACGTAGGGTTATTCGCGCCCGTTCCACCCAGG 683 28 100.0 32 ............................ TTGCCTGATCCCTTGATCGGGAACCTTGATAT 623 28 100.0 32 ............................ ATCCGGTTTGCGTAGACGCGGTTGGCGATGCG 563 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGAGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12578-13806 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXL01000147.1 Pseudomonas aeruginosa strain VET-69 PA2_G7_NODE_86_length_22272_cov_13.5737_ID_171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12578 28 100.0 32 ............................ AGGTGCATAACGAGGTTCGGCACGACTTGCTG 12638 28 100.0 33 ............................ TTGCTGCGGGCCGTTACCGGCCTGGGACATGCT 12699 28 100.0 32 ............................ TTCAAAAATTCGCCCAGGTGATCCCAGATGCG 12759 28 100.0 32 ............................ ACTGGGCGAGCGATCAGATGGAGGATTAGGCG 12819 28 100.0 32 ............................ TACAGACTACTAGCCCCTCCGAAGCCCCATCC 12879 28 100.0 32 ............................ CTGCTCGGCGCCCTCGGCTTGCTCCTGTGGGT 12939 28 100.0 32 ............................ TTGCAGCTCGTCGACGCCGTAGACGTTGATCT 12999 28 100.0 32 ............................ TACCTGCGCGGCCTGTCTACCCAGCGTATTGG 13059 28 100.0 32 ............................ AATAATTCAGAGTCCAGCCTAGCGCTGGGCTT 13119 28 100.0 32 ............................ TTCGTCAAGAACTACCCTGGCGCGTATCTAGA 13179 28 100.0 32 ............................ TCAACCGCGACGCCCTCTTTGTTGTACTGGTC 13239 28 100.0 32 ............................ GACCGGCGTTGTCCATTTTCAGGAATTCGGCC 13299 28 100.0 32 ............................ TGTCCGAAGCCGGCGGCGATTGCGTGGGCGTG 13359 28 100.0 32 ............................ GCGATCATCGAGTCATAGTGCGCGGCATCGCC 13419 28 100.0 32 ............................ AAAAACATCGGTCGGCACAGTCAATGGCACGC 13479 28 100.0 32 ............................ TTAGTGGTTGGCATGGCGAGTGATGCCACGTA 13539 28 100.0 32 ............................ ATCAGGACGTGCCAGATGATTCCGCCAGTGGA 13599 28 100.0 32 ............................ CTGCCCTATGACCCCCTGGCGAAGGGCGGGAT 13659 28 100.0 32 ............................ CAGGGCAAGCGGCACCGTGTCGCCGTCGGCGA 13719 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 13779 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCTTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //