Array 1 2016-2654 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGJ01000033.1 Escherichia coli strain MY55 MY55_BDMS190049444-1a_1.clean_(paired)_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2016 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 2077 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 2138 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 2199 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 2260 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 2321 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 2382 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 2443 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 2504 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 2565 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 2626 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28356-28934 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGJ01000033.1 Escherichia coli strain MY55 MY55_BDMS190049444-1a_1.clean_(paired)_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28356 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 28417 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 28478 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 28540 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 28601 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 28662 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 28723 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 28784 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 28845 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 28906 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGTTAAATATTGTTCACCATCATGGATCAGGAAGTGTTCCCCGCGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGCGGGGATAAACCGAATTAAATGATTTTGATGCGCGCCGACTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACGCGGCTGCATTCAGTGATATCCAGTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCATCTATTTATCTCGCCGCGATTGGCGATAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAACGGCTGGCGAAGCAGGTGGCTGGCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTACCGCCCCGCAGAGGCGCTGGCAGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATGACCTGTCGCTAAAACTCGCCGCGTACAGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29113-29629 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGJ01000033.1 Escherichia coli strain MY55 MY55_BDMS190049444-1a_1.clean_(paired)_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29113 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 29174 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 29235 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 29296 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 29357 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 29418 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 29479 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 29540 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 29601 28 72.4 0 .AA........C..T....A..-.C...C | T [29620] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCGATAAACGCTCAATACCAGCCGGAATAATCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGAATCTGCTGCGCACAAGTTACACGGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTGATCGGATTCCAGAAACGAACCACTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGTTTAGTGTGGAATTTGGCGACGCGGAGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTAGCTAATATTGGGCGGCTAACGTCATCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTAAATATTGTTCACCATCATGGATCAGGAAGTGTTCCCCGCGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGCGGGGATAAACCGAATTAAATGATTTTGATGCGCGCCGACTTGAA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 386-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGJ01000185.1 Escherichia coli strain MY55 MY55_BDMS190049444-1a_1.clean_(paired)_contig_185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 385 29 96.6 32 .......................C..... AATTAAATGCTTGTGATGCGCGCCGACTAGAC 324 29 96.6 32 .........................T... TGGTGGTGGCGGAAAACAGACAAAATATCGCA 263 29 93.1 32 ...T..............T.......... TTTCAGTCAAGTAAGTCTAAATAGATAGCCCC 202 29 82.8 32 ..TT...............C...CC.... CCATTGTTGCTGAAAACAGACAAAATAACCCA 141 29 96.6 32 ...T......................... ACGTTTAGTGTGGAATTTGGCGACTACGAGCG 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTGGTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACCCGCATCCTCCTGGCCCATTTATATACACGCGGC # Right flank : GTTTAGCTAATCTTGGACGCGATCGGAGTTCACGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //