Array 1 133770-132552 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQG01000022.1 Dickeya dianthicola strain CFBP2015 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 133769 32 100.0 33 ................................ CTAACTACTGCCGATGTGTTGAAACTACGCTTC 133704 32 100.0 34 ................................ ACTCATCACCTGACTTGCTTTCTTACGTGCTCTG 133638 32 100.0 36 ................................ GTAGTAAGTCATGATAGTCACCTCATTGAGTAAGCC 133570 32 100.0 34 ................................ GTTCGCTACGCTCTACGTGTCGTGGGTGGTGGGT 133504 32 100.0 34 ................................ TTCGCAGGACTGATACCCACTGGTATCGCCCATG 133438 32 100.0 33 ................................ ACCAAGATACGCTGGCCGTGCATCACCTCCTGA 133373 32 100.0 33 ................................ AAATTAATCGCTGTTAAAGCTATCCCTGCACAG 133308 32 100.0 35 ................................ AAGTGCATCAGTCTTGTTACCTCCACCCGTTCCCG 133241 32 100.0 34 ................................ TTCGTCAGTTGCCTGTCCATCTTGATGTCGCCAC 133175 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 133110 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 133043 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 132977 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 132911 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 132845 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 132779 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 132713 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 132648 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 132582 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 98995-98426 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQG01000017.1 Dickeya dianthicola strain CFBP2015 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 98994 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 98934 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 98874 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 98814 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 98754 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 98694 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 98634 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 98574 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 98514 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 98454 27 89.3 0 .......................-..CG | GG [98431] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 107710-110379 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQG01000017.1 Dickeya dianthicola strain CFBP2015 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107710 28 100.0 32 ............................ AGTGCATTGCGGCTGCGTTCATCTGTCATCAG 107770 28 100.0 32 ............................ ATAGCGTCATCCGTGGCGCTATGTGAGTATTA 107830 28 100.0 32 ............................ ACATCAGCACATCTTGCGCATTGTACTCTGTA 107890 28 100.0 32 ............................ GTTTGCTGCCGCATCTGTCGTGACTGCTCAAT 107950 28 100.0 32 ............................ GTACACAGCATGGCGCGGAAATCAAGTGTTAC 108010 28 100.0 32 ............................ ATACAAGCGTCGTAGAACGCTGTGACCACTGT 108070 28 100.0 32 ............................ AGCAAGCGAAGAAAGCGAAGAAAGCAAGTACC 108130 28 100.0 32 ............................ CATCGGACTTCTTATCGAACTTGATAGGCAGC 108190 28 100.0 32 ............................ GGAAGAAATTCTGAAGCTCGCTGATGACGAGC 108250 28 100.0 32 ............................ AAACAGTGTGCTGAACTTATTAACGATGATAC 108310 28 100.0 32 ............................ GCGGTGCTGAGGCCAATCCTTAAGGTCGAGTC 108370 28 100.0 32 ............................ AGAATCCATCCCATCAAACATTGTAGGAGGAT 108430 28 100.0 32 ............................ GAAGGTGATAGCCCCGAGAGAGCAGAGAGAGA 108490 28 100.0 32 ............................ GCGATATTGTGGATATGCTCATCGCCGCTGGT 108550 28 100.0 32 ............................ ACGGTCGTGCAGTGGGTCTTAAGCAAGGGTTA 108610 28 100.0 32 ............................ TTGAGAGTATTCCCTCATGAACGATGTAAAAA 108670 28 100.0 32 ............................ ATACGGGATGACGCTCAGACAGTTAAAGCATA 108730 28 100.0 32 ............................ AGCAAGCGAAGAAAGCAAGTACCGATGAGAGT 108790 28 100.0 32 ............................ CGTGTCTACGCAGCTCTTGCACTGCTCTAGCT 108850 28 100.0 32 ............................ TGAATCAATAAAGTAAAGTTTCATTTATTTCA 108910 28 100.0 32 ............................ TTGATAGGCTGGCTTGATGCCAGCGTTATCTA 108970 28 100.0 32 ............................ TAGATACCAGCTCAGGCCTAAGGGCCACAATC 109030 28 100.0 32 ............................ GTGCTGCCCGTGTCGCCGCCGATGCTGCCGAA 109090 28 100.0 32 ............................ TCTAGACGCAATCCTCTAGACGCGACGCGACG 109150 28 100.0 30 ............................ GTAAGGTGATAGCTCAGAGAGAGAGAGAGA 109208 28 100.0 32 ............................ ACACTAGCCCAGACACAGAGTCAGGACAGTAC 109268 28 100.0 32 ............................ ATTAATGGTTATTTGTGCCTTGTACCGGGTAC 109328 28 100.0 33 ............................ CGGCGGGTCGAGCATTTCCGCTGAAAAAGCTCT 109389 28 100.0 32 ............................ GTACCGACACAGATGCTGAATAAAATCGTTGA 109449 28 100.0 32 ............................ TCATCCGCGTTCAACGCGCAGCGCTTGTCTGT 109509 28 100.0 32 ............................ TGCAATGATTAACTATACAAACAAAAAAGCCG 109569 28 100.0 32 ............................ GTTCGTTCGTTCCTCTCTCTATAGTGACAGTC 109629 28 100.0 32 ............................ CTAAGTACATGACGGCCCTGTGGCCTGAGTAC 109689 28 100.0 32 ............................ TATCAAGGCACTAACTAAGAGAGTTAAGAGTC 109749 28 100.0 32 ............................ GCAGAAGATGTTATCATTACACGAGTTAGAGC 109809 28 100.0 33 ............................ ATGCGCCCCAGCGCTCTAATACCAATTGAATAT 109870 28 100.0 32 ............................ GCTCAGCAGGCTGGCAGGCGTACAAGCCAGGA 109930 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 109991 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 110051 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 110111 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 110171 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 110231 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 110291 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 110351 27 85.7 0 ....................G..-..CG | AG [110369] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.7 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //