Array 1 281039-280153 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892079.1 Streptomyces sp. ATexAB-D23 B082DRAFT_scaffold_8.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 281038 33 90.9 28 .............................AA.A AGCTGATCACGAAAAACCTGCTGCGGTC 280977 33 100.0 28 ................................. TCCCGCTCCCCGTCCAGTGGAGGGCCGC 280916 33 90.9 28 .............................G.CA CGTACACCTGGGCGCGGCGCCGTTCCTC 280855 33 90.9 28 .............................GTC. TCACCCTCGGGGAGGACGGCCAGGAGAC 280794 33 93.9 28 .............................T..T TCAGGAAGTCCTCCAGGTCCATGTCCTC 280733 33 100.0 27 ................................. GCTGCGGCTGGTCATGGCCACAGAAGC 280673 33 90.9 28 .............................TG.C ATTCTCCTGGGATTCGGAGTCGCGCTGC 280612 33 93.9 28 .............................A..C ACTCGGAGCCTTCGCCCCCAATGCGTTC 280551 33 90.9 28 .............................GG.A AGGGGGGTGGTGTCACAGACGACGCCAC 280490 33 90.9 28 .............................GA.C AACGTGCCCGCTTCGCCCCGAGGCTGGG 280429 33 90.9 28 .............................GT.A TCAGTTCCCACCCGGACCCGAAAGCGGC 280368 33 93.9 28 ..............................G.C GGATTCGGAGCTCGTCGGCCCCGGGAGC 280307 33 93.9 28 .............................G..T CACCGATCGCGCGGATGACCTGCGCGGA 280246 33 93.9 28 ..............................G.C CGGAGGCGAAGAACCCGAGGAAGAAGAA 280185 33 90.9 0 ..................A.......T....T. | ========== ====== ====== ====== ================================= ============================ ================== 15 33 93.1 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : CACACAGCGCAACAAGAGCCCGAGCACGCTCAAGCTCCCCGGCCAGCCCCAACCCGTCAGCTATACGTACCCTTTGATTGCCCGCCAGGTACACGTCCCACAGGTGAAGCGCCATCGCGGCTGCGTCAAGTAGATGTCTTACTAGTGGGTAAGGAGGCAGCGCCGGATCCAACCCACGGGACTTCCCCCACAGCGACTCATCCGGCACTTCCTGCCTGCGCAGCACGCCAACCCACCCCACTCCGCTTCTTGGACCCCGACCCGGCAACGGAAGCGACGCCGCTACCGATGGCATCCAAGCACTCGGCACAGACATTCAGTGCCGATACCCAGGTTCCGATGGTCGTACCCGGACACTGACGGGAGCCGTCGTGCGCCGCCTCGGTAACCTCGGGAGCCGCAATTGGATAGGCTGACGCCGTGCGACTGACTGAGCACCTCATCCCTTCAGGGAAGGCAAAGAAAATGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : CCACGCTTTCCTCGCGGACGGGAAGACCCTGAAAGCCCGGAAAGGGCCTTCGCTGCAGGTCAGGGATCCTTGCACAGGCAGAGCCGCAAGTGGCGGCAGAATAGTCGGGCTGTACGCCGAGCACAGTCCACCCGCGGACAGCGACCTGGAACTATCTTCCGTCCGGTGCCTCGGTGGGCCGGGTGGCGTAGAAGGCGACAGCTGAGGCAGCGGCTACGTTCAGTGAGTCGACACCGGCATCCATCGGGATGCGTACATGCTCGTCGGCGGCCTGTAGCGCTCCGGCCGACAGCCCCTCCCCCTCCGTACCCAGCATCAGGGCGAGCTTCTCGTAGCGGCGACCGGCAAGCTCGTCGAGCGTGATGGAGTTCGGCGAGAGGGCGAGAGCCGCGAGCACGAAGCCTTCTTGCCGGACGACTTCGGCGTCATGTGGCCATGACTCGAACCTGGCATACGGAACCGCGAGGACAGCCCCCATGGACACCTTTACAGCCCGCCTA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 290943-291402 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892079.1 Streptomyces sp. ATexAB-D23 B082DRAFT_scaffold_8.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 290943 33 90.9 28 .............................TG.C TGATGGGCCCGTCGTGGGTGTCCATAAG 291004 33 93.9 28 ...............................CT GACGGATGGTCTGGCGGGAACGGACGCC 291065 33 97.0 28 .............................A... AGACAAGGTCTCATGACCCAGCCCACCC 291126 33 97.0 28 ...............................A. CCACAACGCCCGCATCCTCGCTGAACAC 291187 33 93.9 28 ...............................AC CTACGACCTGCGCGACCTGCTGCGCAAC 291248 33 93.9 28 .............................T..A AGAACTCGCATTCGGCCTGGCAGCGGTC 291309 33 87.9 28 .............................GTTT GTGTCCTTGTCGGGCACGGGGCGGTGTC 291370 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================ ================== 8 33 94.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : CCCGCGCATCGTCCGGGACGTCCAGAGCCTCCTGTCGCCAGGCTCCACGGATGGCACCGATGAAGACGAGCCCCGCGAACGGCGCGACGTCCAGCTGGTACATCTCTGGGACCCCGAGGCCGGCGTCCTTCCCGCCGGCGTCAACTACGCGGACAGAGGTGAATGATGCCGTCCATGCTCGTAATCGCCACCACGGCCGTTCCTGACCACCTCCGTGGGGCACTCAGCCGCTGGACCAGCGAAGTCGTCCCTGGCATCTTCGTCGGGAGCGTCTCCGCCCGCGTCCGTGACCAACTCTGGCAGGCCGTCACCGACACCGTTGGCAACGGCGCCGCCGTCCTCGTCCATCCCGCCCCCACCGAACAGGGCTACGCCATCCGAACCGCTGGCACCCGCCGCTGCGTCCCCACAGATTTCGACGGGCTTACCCTCATCCGTATGACCGCCACACCAAAAGTAAAGGACATGTAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : GGCCTTCATCCACCGGGGGACGTTCAGCGCCCTCCCCGCGAGATCGCAGTAGAACGCGGGCGCCATCTTCCGCAGCGCCGCCGCACTCGGCATGGACGCCGTCCTGCTCTCCCCGGACTGCGCAGACCCGCTCTACCGGCGGTCCGTCAAGGTCTCGATGGGTGCGGTCTTCTCCGTCCCGTACGCCCGCCTCGACACCTGGCCCAAGGCCCTGGAGACCGTACGCGAGGCCGGTTTCACGCTGCTCGCGCTGACCCCCGACGAGAAGGCCGGCAGCATCGAGGAGGCGGCTCCGCACCGGATGGACCAGGTGGCCCTGATGCTCGGCGCGGAGGGCGACGGCCTCTCCACCCAGGCCCTCGTCGCCGCCGACGAGTGGGTGCGCATCCCGATGGCCCACGGCGTGGACTCGCTGAACGTCGGCGCGGCGGCCGCGGTCGCCTTCTACGCGGTGGCCACGGGCCGCCCGGAGAACTAGGGCCTGTCCGGCGGATCTTCGT # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108377-107436 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892068.1 Streptomyces sp. ATexAB-D23 B082DRAFT_scaffold_7.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108376 29 100.0 32 ............................. CATAGCGTGTTGATCACGACCTCTGCGGCAAA 108315 29 100.0 32 ............................. CATAGCGTGTTGATCACGACCTCTGCGGCAAA 108254 29 100.0 32 ............................. ATCCGGCACCATGATCCACTTGTTGTCGGGGA 108193 29 100.0 32 ............................. CTGATGAGTGCAGTGAATCAGACAGGGGCCGC 108132 29 100.0 32 ............................. CGCTTCGGACGCCGCTACCAGCTCGCCCAGGA 108071 29 100.0 32 ............................. TTCGCCACCATCTACACAGCCCCCGTCCACGC 108010 29 100.0 32 ............................. GGCGGCGGCCGGTGGGGCGGGGGTGGTTTTGG 107949 29 100.0 32 ............................. AGCGCCTGCTCGACTGCCGGGTGGAGGGCTCC 107888 29 100.0 32 ............................. CCCTACGGCAACGGCAAGCACCCGAGCGAGCT 107827 29 100.0 32 ............................. AGCGCCTGCTCGACTGCCGGGTGGAGGGCTCC 107766 29 100.0 32 ............................. CCCTACGGCAACGGCAAGCACCCGAGCGAGCT 107705 29 100.0 32 ............................. GGTCCGGGGTCCGCCTCGGCCGGTACGGGGAC 107644 29 100.0 33 ............................. GGACTCCACGGCCGCCCGGCCCGGGTTCTGGAC 107582 29 100.0 32 ............................. CTCTCCGAACTGCTCGCCTCCGTACGGCTTCT 107521 29 100.0 28 ............................. TCGCAGCCGCGGAGGAGCGCATCGGCCG 107464 28 86.2 0 .............C........C..-.A. | A [107441] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.1 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCAGCGCGCAGTTACCCGTGTGCCGTGAACGCGAGTGGGCGGGGGTTGTAGAGCGGTCTGACGCGGTGCTGCCCGGATGAGGGAGGGTGGCCGTTCGAAGTCGCCATGCGGAGGGAGGGCTCCAAACCGCGGTCCTGTACGACGCGCGGCTCTGTTCTCACTCCACGCCAACGCGGCCGTCGCTCTTCGGCACCTCCGATTGCTGGCCAGAGCCACTTGTTTGGCAGAACCTACGGCTACCCAGGCCCAGCTTGGGCCTGGGACACTTCGAGTCGAAGCGAAGCAGCCTGACCAGGCACGGGAAGCCTCGCGCTACATGGGGCGTGAGTGAGTGAGCGTGCGCACGCATGGTGGCCCCGGTGAAGGGGTGAGCCTGGGGATGGGTGGTCCTATAGGCTGCCACGCATGCCTGCTATGGGAGCCTTGGGGTGGTTATGTCGGACTGTGTGAAAGTGGTCAGAAAGCGTACGCCCGCGAGGTAACGCCGCAGGTCACGCAGA # Right flank : GTCTGGGCACCGCAAAGAAGCCTCGCCGCCCAGCACAGCAACCCCCGCTCCGCACAAGTCGCGAGCGAACGTCGCGCCCGCCACCCCCCCCCGCCCGAACGCGTCACCCGTCCAAGGACCGGCACACACCGCACCGCACCCAGTCGGCGCCAAGGCCGCACGCGCCGGCCCCCAACTACCGTGGCCCACATGAAAAACCCGCACGCGCAAACGCCCACCCACGCCCACGCCGACACCCACGCCACCACCCCCACCGACATCACCGCCGACATGATCCGCGACCTCCTGCGCGACCAGCACCCCGACCTGGCCGACCGGCCCCTGAGGCTCGGTGCCCGGGGCTGGGACAACCAGTTGTGGCGGCTGGGAGACGACCTCGCCGTACGGTTGCCGTGGGCGACGGAGTCCGCAGACGAGCTGCTGCACAAGGAACACACCTGGGTGCCCTCGCTCGCGCCGAACCTCCCCCTCCCGGTCCCCGTCCCGCAGCGCCTGGGCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115011-114433 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892068.1 Streptomyces sp. ATexAB-D23 B082DRAFT_scaffold_7.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115010 29 100.0 32 ............................. GACGAACACGGACCGGTGATCACCGGTCTCGC 114949 29 96.6 32 ............................A AGTACGATCGGTTCGCGAGGCTGATCGAGCTT 114888 29 100.0 32 ............................. CCCCGACTTCTACGAGCGCTCCGCCGACGCCG 114827 29 100.0 32 ............................. AGTGCGTTGAAGCGGTTGTGGAGTCGCCGGGC 114766 29 100.0 32 ............................. TGAACGTCAGAACTCGTCGGGGCCCCATCATG 114705 29 100.0 32 ............................. ACGTGAAGTGTTCGCACAGCCGCGGACCGACC 114644 29 96.6 32 .........................C... GGCGGGCATGACGCGATGCTCGTGGACCTCCT 114583 29 93.1 30 G....................C....... GGTACGAACTCGCCAGCAGGCGGCGTACCG 114523 29 82.8 31 T..A...T....T............C... GGCCACGTGGATCACGGCCGGGCTGATCCCA T [114495] 114462 29 82.8 0 ........G....A........CT.C... | T [114436] ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.2 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AATCGTTTTCGCCCTGGTGACGGCCGCGCTGTTGGCTGCGGTAGTGCTCGCCGCCGCGCTGGTTCTCGTGCTGGTCTTTGGAGTCTCTGGTACGGCGCGGGACGGTGTGTTGACTGGGGGCAGGCTGGTGGGAGCGGCGACAGGAGTGTGGCGCGTGGTGCGAGTATTGCGCCGGTTCGACGCGCGACGTCGGTTGGGTCATTGACGCGTCGCGTGAGACAAGGAGGCGGCGCTCTCAAAGGCGGGATCGGTCGGCGGGTACGACAGGTCGCGTACCTTTTCTGTGTCTCGCATCTCCACGATGAGAATCGGGCCTTGGAGGACTCCACGATGGCCATGAAGCAATCGATCGAGAGGGCGCGCACGGTGGCCGGGCTGATGGGTTGACCTCGCAGCGCGCCGCTTGTGCCTGCTGTGGGAGCCTTGGGGTGGTTATGCCGGACTGTGTGAAAGTGGTCAGAAGACGTACACCCGCGAGGTAACGCCGCAGGTCACACAGA # Right flank : ACGTCTCAACACGCCGAAGCGCTCGAACCCGTCGAAGCCCTCACCCAAGAAGAGGGGAGTCAGCCAGGCCAACAAGCCGTCGCAGCCGCCTTCGAGCGGAACACCGAAGGGCAGGACGGAGTCATCACCGCCCGGCCCTGAACCCGCCGCTCAGACCAGCAGCGGGTTCACCTCCTCGGTGCAGCCAGACGCGAAGACAACCAGCCCCGGAATCGGAGGACCATCACTTCCTGGAAAGGTGAACGCGCCATCCACACTCACCGAGTCCGTGCAGTACTGCTGACGCGGCGCGTACTCGCCGGCACGAAGAACGACCGGACCCTTCCTCGGGTACGGAGTCGTTCCCGAATAGGCGTCGGTACGAATCGAGACATCGCATCCGCCTCCGGCCACTGTAGGAACCTCACGCAAACCCAACCCCCTGGCCGCCTCGTTCAGGAGGTCCAGATTCGTTCCGGCGGGCAGCGTCCTGACGTCGACGAGCCGCCCGCAAGCCACGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 118904-118264 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892068.1 Streptomyces sp. ATexAB-D23 B082DRAFT_scaffold_7.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118903 29 96.6 32 .....A....................... TTCAGGATCGCCACGGCCTGGTCCGGGGTGAA 118842 29 93.1 32 .....A......................A GCACGCCGGAGCGCCTGTTGGCATGCGCCGCG 118781 29 100.0 32 ............................. GCGACTGACGGCCTGTCCAGGCCCGGACAGAG 118720 29 100.0 33 ............................. GAACGGGGTGACCAGCAGGAGCGCAAGCGGAGC 118658 29 100.0 32 ............................. GTCAGCGCCCACGCTCCGCCTTCGAGCATCGC 118597 29 100.0 32 ............................. GACCGCGGCCGGCAGGTGCCCCGCAAGGTCGG 118536 29 100.0 32 ............................. GACCGCGGCCGGCAGGTGCCCCGCAAGGTCGG 118475 29 100.0 32 ............................. CGGCACAGTGAGCCGCTCGCTGACAACGATCA 118414 29 100.0 32 ............................. TGGGCCTGGCCCAACCCGGCGCTCGGCAGCTT 118353 29 100.0 32 ............................. GCGCGCTGAAGGTGATGCCCGGCGCCGCGAAC 118292 29 93.1 0 .......................T.C... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACTCGCTGACCCGGCAACAACACGAAACCCTGCGCCTGCTGGCCCGCGGCTACACGGACGAGGCCATAGCCAAGCGCCTGGGCGTCTCCCCCCGAACCGCCCGCCGCATAGCCACCGGCCTCCTCGGCCACCTGGACGCCCGCAGCCGCTTCCAGGCAGGCGTCCACGCGGCCCAACTGGGGTACCTGCCGGCGGACGGGGGGCGGGCTTGAGGGGGTCGTCCCATCAACCACCGGGCGCGCCATCGACGTTGGACCTGGTCGAGACGGCGAGACGGCGAGGCCCTGGCCGGAGGCCGACCGGTTCGGTGCGCTGACATTCGCCCTGAGCCTTGGGTGCGCGCGTGGTGGGTGGGGGTGGGGAGATTGGCGCGGACGGTAGGGTTGTTGGCCGGGACTGGGCTGTCTGCCTGCTATCCGATTATTGAGGTGGATATGCCGGACTGCGCGAAAGTGGTCAGAAACGGCGCGCACGCAGCGTAAAGCCGCAGGTCACGCACC # Right flank : TGGTCTCAGTGATACAGACGACCGATATGTAGGCCGAGCGGCACATGGGCGAGGCCCGTAGACCCGGTCGGCGGAGTGAGGCGAGGTAGGGCGGTGATCAGCCCCGAGTGAGGCCCCTTGCTGGGGACAGTGCTACGGCGACCGGTCAGACGGTGCCGGCTTGGATGCCTGCGACGAACTCGGCGAAGGCATCGGCGGAGACGGTTACGACAGGGCCGGTCGCTTGCTTGGAGTCACGGACGGGGACGATCCTGGCAGCGATGGCGAGGTTGGCGGCGACCTCGACGCAGTTGCCGCCGTTCGAGCTGTACGAGGACTTGTACCAGCGGGGGGATTCCTCGTCGCGGGGCTCCCTTTCGCAACTGGCTGATCTCGGCCGCTGTCGCTGCCTGCGACAGCGCCTCGCCCTGCAGTTGATGGTAGGCCGTGAGCATGGGTACTACGAACGACGGCTCCCGGTCGACGTGACCCTGCGCTTGTGATTCGGCGTAGGCGACTAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 140541-140145 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892068.1 Streptomyces sp. ATexAB-D23 B082DRAFT_scaffold_7.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 140540 30 96.7 31 .............................A TTTTCACGATTCCGAGTTCATTTCACGCCTG 140479 30 100.0 31 .............................. CCCAGCGCGGCGCGGTCTTCGGCACCACCGG 140418 30 96.7 31 ............................A. ACGGCTGGCAAGGAGGGGGGTCGGCCGGGCC 140357 30 93.3 31 ............T................T CGGCGTACTCGGCCTCCAGCGCCGCGACTTC 140296 30 100.0 31 .............................. GAAACGGTCGCGAATCGATTTACGACTACGA 140235 30 93.3 31 C............................C GGGTCGGGCCCGGCGTAGGTAATGCTGCGCG 140174 29 73.3 0 C..........A..C.G..T.....-..GA | C [140153] ========== ====== ====== ====== ============================== =============================== ================== 7 30 93.3 31 GTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : CGAGGAGTCCTTGTTCGCCCCGGTCCCGCTCGCTCAGGCACTGGTCGCGGACCCGGGCGATGGCACCCTGGCCGGGATGGCCGCGTACTCGTTCCTCTGGCCGGCGCGGGGGACGACGCATGCGCTGTTCCTGAAGGAGCTGTACGTGAGTGAAGCGTGGCGGGGAAGGGGCGTGGGCGCCCGCCTGATGGCGGAACTCCGAGCGGTGGCGTCTGCCCGTTCCGGGTGCAGTCGGATGGAGTGGATGGGGGACACGGACAACGTGCAGGCTCTGGGGTTCTACGGGGCGCTGGGGTTTGAGGTGGTGGAGGGGAAGGTGGTGTATCGGGTGGGGGCGGAGGGGTGAGGTGGCGGTTGCGGTGAACGGGACCTGGGGGCGCGCGTGTTGTTCTATGCTTGCGGCGTGTTCCTACTTTGTTGAACTTTAGGCGGTTATGACGGAATGGGTGAAAGTGGTCAGAAACCACGCCCACGCGAAACGAAGCCGCAGGTCACGAAGA # Right flank : AGGTGAGTGGGACGACGACACTGGGTACGACGATGCCGTCCGGCGTGCGCGGCGTGTTACGAGGATCGGCTGGACGGCCATCAGCGGCACGGTGACGGCGCTCGGTTGCGCCGCCGTCGTGGTCGCCTGGTGGTGGCCGTCGGCTGCGTGTACGTAGTCGTGTCCATGAACCGCTAGGGCCTGTCCCAGTGCTCGGCCAGCCGGTCCAGCGCCGCGGACGTGAGGGCCGTGATCGCCGCGGGCAGTGCGGTGCGGACGGCGGGGGCGAAGTGCGGGGAGTGGTTCGGGGGGATGTCCCTGCCGCCGGTGGCCGCCCACTGTCGGGGGCTCGTGGTCCCCAGCATCCAGTAGACCAGCGGGATTCCCGTCTCGCCGTGGAGGTCGCGGCCCGCGTCCCCGTAGAGGGGGAAGTCCTCGGCGGCCAGCGAAGGGGGCCAGACGGTGACGCGTTCGCGTCCGTACAGGGCGGTGTGCGCGGCGCGGACCGCCTCGGTCGCCGC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 142896-142133 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB892068.1 Streptomyces sp. ATexAB-D23 B082DRAFT_scaffold_7.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142895 29 100.0 32 ............................. AGTCCGGCGAGCGACCCCTCGGTGTACCGGGA 142834 29 100.0 32 ............................. AGGCCATCGGCGTCATGCAGAATGCCGGAGTG 142773 29 100.0 32 ............................. TGTGGACCATGGAACTGGAACAGGCACGTGCC 142712 29 100.0 32 ............................. CGAGCCCCGGGCTCTACAGGGTGACTGCCTGT 142651 29 100.0 33 ............................. CACGGCCTGGGCCAGCGAGAAGGTCCAGCGCTC 142589 29 100.0 32 ............................. TGCTGCGGACAGCCCATGGAACAGCGCGGGCA 142528 29 100.0 32 ............................. CCTTGCAACGAGCCCTCGGTGTACCGGGAGAG 142467 29 100.0 32 ............................. AACCTCGTGGTCATTTGCGGCCCTCGGCTATC 142406 29 96.6 32 .....................G....... GCGGAGAGCGTCAAGAAGGCCGCGGACACCAT 142345 29 100.0 32 ............................. TGTATCGACGGCGCGCATATCGACTTCCTCGC 142284 29 100.0 32 ............................. CAGGCCACGGCCGCCCCGCTGCTCGCCATGGC 142223 29 93.1 33 ....C...............A........ CCTCGGCAAGTGGGGCGAGAACCAGGCCGCCGA 142161 28 79.3 0 ...C........G.G.G.......C-... | C [142151] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.6 32 GTGTTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGCGTACCGGCTGTCGTCCCGCTCGTAGAGGCTTACGGCCCCGCACCCGCCCCAGGCGACGAAGGCGTCGGGTTCGTGGTCGTTGCCCGGGTGGGGGAAGGAGACCTTGAGGACGGCGGGGGGCGTGTGGTCGCGTCGTACGGGGAGGATGACGCCGACGCCGCCGTGGGTGAGGGGGCCGTCGGGTGCGCAGCCCCACGCGTCGATCAGGTCGGCGACGATTACCGGAAGTTCCGCGAGCCAGGTCGCCCCGGCGCTGCCCTCGCGCTCGACGGTGGTCCGGGCGAACTCCTCCGGGATGACGATCATCTGGGCACCTTACGTGGGTGGGGTGCGGTTGGGGTGGGGCTTGAGGGAGGGTGAACGGGGGGTGTGGCTGCGGTTGTTGGCCTAGGGTGGCGGTGTGTGCCTGTTGTGTGGGCGTTGGGGTGGTTATGCCGGAGTGGGTGAAGGTGGTCAGAAACGGGCCTGACGCGAGACGAAGCCGCAGGTCAGGAAGT # Right flank : GCCGCTCACCGGTCTGCTGGGCCGTGACGCCTACTGCTCCCCGCACCTTCCGGGGACGGCGGCCAGCGCCCCGTACCCTGGCCGACATGTCGGCCCGCCCCCTCAGCCTCCACTCGCTCCGCTTCACCCCAGAGGAGATCCGCGAAGTCGTCGCCCTCTATGTCGGTAACCCGGCCTACTGGCGCGCGGCAGGCGAGTACGACCCCGACGATATCCAAGCGGCGCAGGTCGAGGCCGATCTGCGCCGCGAGGTCGCCATGGAGGGCGGCGAGGTGTTGCTCGCACGCAGTGGGGAAGGGCGACTCGTCGGGGTCGTCTGTCTGCTGCGCCGGCATCCGAAGGACGGTCTGCCCTGGATCGGGCTGCTCATCGTGGACGGCCGCTCCCGTCGTACGGGGATCGGGCGCCGGCTCGTCGGGCTGGTCGAGGACCGGTTTCGCGCCGAAGGGCGGAGTGGCCTCCGGCTCGCCGTACTTGAGAACAACCCGCATGCGTTGGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //