Array 1 19266-18878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUQ010000015.1 Erwinia amylovora strain EaLevo2 Ea_Levo-2_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19265 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19206 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 19146 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 19086 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 19026 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18966 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 18905 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCAGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : TGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGAAAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACCGCCGTACAGGCGGCTTA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31199-28730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUQ010000015.1 Erwinia amylovora strain EaLevo2 Ea_Levo-2_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31198 29 100.0 32 ............................. AATAGCATATCGCCTCCCCATCCGGGAGCAGG 31137 29 100.0 32 ............................. TACGAAATCAGCGCCGTATTCCCTCACGGCCT 31076 29 100.0 32 ............................. AGTTTCTGACTAAAGGGTTTGAAGGTGCTCGC 31015 29 100.0 32 ............................. ATCATTTTTCATATCTCGCAATTTATAGGGAT 30954 29 100.0 32 ............................. TAGGGGTGACGGGAGATACGTATGCGCAGCGA 30893 29 100.0 32 ............................. TATTGACCTAGAGTTTGAGCAACGTAAGATTT 30832 29 100.0 32 ............................. TGAATCAGCATACTTATCAAAGAACGGCGTCT 30771 29 100.0 33 ............................. CAACTAATGACCTCGTTTATATGATATTCGGCC 30709 29 100.0 33 ............................. CCAGAAAATGAAAGGGCAGCAACGGCGCAGGAG 30647 29 100.0 32 ............................. TAGGTTAGGTGGGGGAGGGGGTTATACAATCA 30586 29 100.0 32 ............................. AATTAATGCGGATCGATTTTATTAGTTCATCT 30525 29 100.0 32 ............................. CTAATCCTGTTCGAAATTATCAACACACGGTA 30464 29 100.0 32 ............................. TGGTCATCGAGGATGGTTTATTACTCGCAAGA 30403 29 100.0 32 ............................. CTCGAGTCCGGCAAACTCCAGCAGTTCGCGGA 30342 29 100.0 32 ............................. TCATTACCCGCACAGCCAGATAGGGCAAAGAA 30281 29 100.0 32 ............................. CCATCGCCTGAAAAGTACGATGTTATCGATCA 30220 29 100.0 32 ............................. GATTCAATAAATGTTCGTATATTCCAAATCAA 30159 29 100.0 32 ............................. ATCGTCTGCTAGTTATCAGTGACAATCAAAAC 30098 29 100.0 32 ............................. GCAATAATACCCGGTAGGTGTGGGGTGATGGT 30037 29 100.0 32 ............................. TCTTTGATGAAATGCTCCGGGGGCATCTGCCC 29976 29 100.0 32 ............................. CATCTGAATTTAGTTACAGCATTCAAAATACG 29915 29 100.0 32 ............................. AAATGGCTAACGCTTTGCGTCAGTTTGGGCAA 29854 29 100.0 32 ............................. GCCGCCGACAACGCTGTTAAGGATGGTCGTAC 29793 29 100.0 32 ............................. GAGATAAACAGATTTGGTTTCTTGCTCTTTGG 29732 29 100.0 32 ............................. CCTGTGGCTGGCATTGCGGTCATACAATAACA 29671 29 100.0 32 ............................. CTGCATAGAGGCCACCCACCACGGCTCGGCAA 29610 29 100.0 32 ............................. TGAGCCGTGACGATGGAGAAACAGACGTTTTT 29549 29 100.0 32 ............................. GACGTTTCTGGAACCTGTTCCGCACAAAGACG 29488 29 100.0 32 ............................. GTGGGTGGGGCAGAGTTTGCGAGCATATCTCC 29427 29 100.0 32 ............................. GAACCTGCTTGCGGTCAAATACACGCTTCCAG 29366 29 100.0 32 ............................. CCGTGCGAATGCTGTAACGGCGAGGGATTCAT 29305 29 100.0 32 ............................. TCAAAAATCTCGAATTGCTCGGTAAACACGTT 29244 29 100.0 32 ............................. GGAGCTGGCAATGATGACGAATGAGGATAGAC 29183 29 100.0 32 ............................. GAAGGAGACGAGGAACAGGATTAGGTATACAT 29122 29 100.0 32 ............................. ATAAATTCAGGATAAAATATGAATGAAAAAAT 29061 29 100.0 32 ............................. TAGCAAGGGCTTATTACTCTCACAATCCACGA 29000 29 100.0 32 ............................. TCACCACTGGCCAGCGGATCCCGGGGACCGGT 28939 29 100.0 32 ............................. GTGCTGATGGAAACCATCGAGAAGGCCGGGGC 28878 29 96.6 32 ................A............ GATATTACGTGTACGCACAGCCGCTGGCCAGT 28817 29 100.0 31 ............................. CAGAGCGGGTCAGATTCAGGGATGTATGTCA 28757 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATGCCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGTCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGTGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 64238-60976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUQ010000015.1 Erwinia amylovora strain EaLevo2 Ea_Levo-2_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64237 29 100.0 32 ............................. CCATGCGCGATGAAATCCCATTTGGTTTTGAT 64176 29 100.0 32 ............................. ACGGCCGCAATTGGGATCAGCCCGTCGATGTA 64115 29 100.0 32 ............................. GCTGCTCCTCGCATCCGCAAGCTGCGCCTTCC 64054 29 100.0 32 ............................. GCGTTAACAAGGGCGCGTTCGCTGCGGTCATA 63993 29 100.0 32 ............................. ACAACCCAAAAATAAATTTCGGGAAATTATTT 63932 29 100.0 32 ............................. CATTGCCCGTCAGTTCCGGGAAGCTGTATCTG 63871 29 100.0 32 ............................. CGTTATGAGCACGTTCACCTCGGCGGCGGCGA 63810 29 100.0 32 ............................. TTCCGTACTATTGAAACGGAGCAGGTGCGCGG 63749 29 100.0 32 ............................. GGGTACAGGCAGCTTCAGGCAATGGGAGGGCC 63688 29 100.0 33 ............................. CGTATTTTCAGGGTATGTACTTTATATGCTTGA 63626 29 100.0 32 ............................. CCGGGATAGCGTCATTCTGTGCGTGGAACATC 63565 29 100.0 32 ............................. CAATTCCGTGTTCTTCAGCACAAGAGCTTAAT 63504 29 100.0 32 ............................. GCTCTGCGGCAATCAAAGCGATTGAATCAGGG 63443 29 100.0 32 ............................. GCCGCACATGGCGACCTGTTATTGTTTGCTGG 63382 29 100.0 32 ............................. AAAAAAAAGTTAAAACATATCATTTGCCACAA 63321 29 100.0 32 ............................. ATGATTATATTAATTGGAAAGAGAGTATTGGG 63260 29 100.0 31 ............................. CAATTGATGATGTTGTAATTCGCCTCGATGC 63200 29 100.0 32 ............................. CTCGACACTGATATTAAGCCAGTCGTTATGCA 63139 29 100.0 32 ............................. GGAGCGTGTGCTGAAATAAAACGATGGGTTTA 63078 29 100.0 32 ............................. CTCGTCAGCTGGGGTTTACGACAGAGGTTTGC 63017 29 100.0 32 ............................. CTTGTTATTACGGAATTCTTTCTCTAAATCTT 62956 29 100.0 32 ............................. GAGGTAGACAGCAGAATACAGGCGTAAAAAAA 62895 29 100.0 32 ............................. CTATTCAGAAATAACATACGAGGTTTCTATGA 62834 29 100.0 32 ............................. CAGGAACATTCAATTGACGCTGAAATGGCGGA 62773 29 100.0 32 ............................. CGGTCGATGCATACGGCACTGTGCCTACGTGG 62712 29 100.0 32 ............................. CGCTAAAGAGGGTGCTGCGACATTCCAGGCGC 62651 29 100.0 32 ............................. GTCTGGAGCTAGGCTTATCCGGGTCATTCACC 62590 29 100.0 32 ............................. CATATAAGAGCGGAAAAGCAGTGGTAGATGGT 62529 29 96.6 32 ...............A............. CCGTACCTGCGCCGGTAACGGTGGGTAACTTT 62468 29 100.0 32 ............................. AAATTTGATGATTTCCTGAAAGCGAAACTTTA 62407 29 100.0 32 ............................. ACGCAGTCGCAGCTGATTATGGGCGGCACGGC 62346 29 100.0 32 ............................. TTGGAACGTCTGAACGCCACGCGCACGCAGGA 62285 29 100.0 32 ............................. CCGCGCGATAAGCCATTTTCAGAGATTCAGAG 62224 29 100.0 32 ............................. TTTGGCGAATTCCTGATTTACCAATCCTGTCT 62163 29 100.0 32 ............................. GCAATAGAATTCTCCGGAGAATCGGACGATGG 62102 29 100.0 32 ............................. TAGTGCAAAAATAAATGCCTTCATATCCCCTT 62041 29 100.0 32 ............................. AGCTGATAATACTTCCTTAGCCGAATTAAAAA 61980 29 100.0 32 ............................. GGAGCTGAAAAGGCATCAGGAGACATGGGTGG 61919 29 100.0 32 ............................. TTAATACGGCGCATTTTATAGCTATTTCGCGC 61858 29 100.0 32 ............................. GAGAGGGACGAAAAAGAACTAAGCGCTTTAAT 61797 29 100.0 32 ............................. GTTCCCAGTGCGGTGCTTGAAGATGGAGAACT 61736 29 100.0 32 ............................. GGCAGATGCTAATTATATGGCATCCGTGGCCC 61675 29 100.0 32 ............................. AACGTGCAGAGCGTGAGGCTAAAGAGGCGATG 61614 29 100.0 32 ............................. CCAGCGGATGCAGTAAATAAGATGATTTCAAC 61553 29 100.0 32 ............................. TAAACACGGAGCTGACCCAGTCCACCCCGCTA 61492 29 100.0 32 ............................. TATCAGGGGAATATCTGGAGGCTCACGTTATT 61431 29 100.0 32 ............................. GGCAATGAACTACTGGGGAGTCGGTGGCAGAA 61370 29 100.0 32 ............................. GATCTCGACTGATTGCATACCCTGACGGCGGC 61309 29 100.0 32 ............................. GCGGCAGAGTTTCGCCGATATGCGCGATACAA 61248 29 100.0 32 ............................. CTCGCCCGAATTCTAAATCAGAAGGGGGATCC 61187 29 100.0 32 ............................. TACCATGAATACTTACAAGCAGGCGCAGAACT 61126 29 100.0 32 ............................. GTTCCCGGCGCTTCGCCACTCTGCCACCACTC 61065 29 100.0 32 ............................. AGCAGTACAACATGTTCGGCTCGGCAATTAAT 61004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //