Array 1 908258-909566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012833.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 908258 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 908319 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 908380 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 908441 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 908502 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 908563 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 908624 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 908685 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 908746 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 908807 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 908868 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 908929 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 908990 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 909051 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 909112 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 909173 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 909234 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 909295 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 909356 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 909417 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 909478 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 909539 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 926273-927766 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012833.1 Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 926273 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 926334 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 926395 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 926456 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 926517 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 926578 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 926639 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 926700 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 926761 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 926822 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 926883 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 926944 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 927005 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 927066 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 927127 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 927188 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 927249 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 927310 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 927371 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 927432 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 927493 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 927554 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 927615 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 927676 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 927737 29 93.1 0 A...........T................ | A [927763] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //