Array 1 25643-26272 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORZ01000009.1 Paenibacillus faecis strain J25TS5 sequence009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 25643 31 96.8 35 .......T....................... CTATGGGCCAATGGGGCAATTGATCCAGTCCCGTG 25709 31 100.0 35 ............................... CGTCCAGGTCACGAGCAGATAATCATTGTTTTCCG 25775 31 100.0 36 ............................... CAGGAATGCGAAAACAAATGCAAGTCTATGAACCCG 25842 31 100.0 35 ............................... CGTCTGGATCGGTCACGACAATTTGATAAGCGTCG 25908 31 100.0 36 ............................... CCGAGGGCAAATAAAAAACGCCTTCCGGCGTTGCCG 25975 31 100.0 36 ............................... ATAAAATCGCCCCCCGGCCCGCTCATATTGCCGCTG 26042 31 93.5 37 .............A....T............ AAATTGAGGGTTACGATCATTATGTGCAGGATAGACG 26110 31 96.8 35 ..................T............ CATGCCGTGGTATATACCTACTTGGTAACTGTATG 26176 31 93.5 35 .........T.............G....... GCCAATATGATGCGTAAATGGATGCTAGGCAACAG 26242 31 96.8 0 ..................T............ | ========== ====== ====== ====== =============================== ===================================== ================== 10 31 97.7 36 TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Left flank : CAAGCAAGAAGTGTCCACGCTTAAAAAAATTGTCAGATCCATCGACAAAGCCGCGTTTCTCACCATCCACGATGTGCGGGATGTGTTTGGAGAAGGGTTCCTGGATATATCGAAGTAGGAGCATGGTTATTGAATATGGGGTCGAGGACGTTGAGCTGGCAAAAGAGTAGGGGGGGTTAAATCGCCAATGGACGATTCCGGCCAATTCTCAAGTGATCATGCAGGCGTTAAGGCTTTCTAAAAAAGGAGATTTATATTATTTTGGGAATAGGGTGAAATCTAGACCTTCTTAAATATAGTGTCAACCTTAAAGGAGAACGCACGAATGGGTGCGAATATGAAGCGAACATGATTTTCCTGGGGGATTCGCACCAAGGAAATCACTTTATTTTACATAAAAGTTAGTTAATGTTATGTAAAAGAGAAGAAGATTCGCTGATTAGGAAGCTTGTTTTTACAATATTTTTATTTTATTGTTTATTCTATGTTGAAAATCGGAG # Right flank : TATGTATGCCTTGGCGTCTGTCGCCCCTTCAACAAAATCGCACCCCTACTCGGGTGCGACTGAAATGTACAATAACTGCATGAGACTGTCCCCATAGGGGCAGAGCATGGCCTCCTGATCCGCATGGCGCGGAAAGGAGGCCTTTTTATTTTTTCCGTGCTTGGAATGAAGCTATCTGCCCGGTAACCCTTTCATCTGCAAACGGTTCAGGCGAAGAAGCAGCATTCTCCGGCCGGGGTTTGGTCTCAATGGTGGAATCCGCTGCTCCATCAGACAACCTTGTTTTACATAGAACTCCTGCACAATTGTATTTTTTCTGTTGGATCAAAATTTCCAGACTCCTGCAATTCTCGGTCCAACACCCTATCCTTTTCGGCGGAGCCCGCCTCCATTTGACAGCCGGGCGGGTGGATAAGAGCCATTTGCGCCGCTATTTTGTCGAATTCGCCCTTTCGGTGGGAAATAGGGGTCCTTTAAGGCCTTATTTTTGGAGAAAGCGG # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTATGCGGGTGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 140197-140695 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORZ01000009.1 Paenibacillus faecis strain J25TS5 sequence009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 140197 32 93.9 36 ...........-C.................... TAAAATGAAGGGTGTAATGCCAAGAAAAACCGTGAA 140265 32 93.9 34 ...........-C.................... TGATCTTTTGCGTATGCTGTTTTACCTTGCAATA 140331 33 100.0 34 ................................. CGTTTACATGGACGAAGATAAAAGCCAATACATC 140398 33 100.0 34 ................................. CCCTAAAGCCTGAAAGGCGTTGTTGGCGATCTTA 140465 33 100.0 34 ................................. TGGATCAACAATTTTGTTGTTACTGATACTCTTC 140532 33 100.0 34 ................................. ATGTACAGGTCCCGCGACCGGCTGCGCAACGTGT 140599 33 100.0 32 ................................. AGCTCAGAAGAGCCTTACTGCGATGGTTTGGG 140664 32 90.9 0 ...........-................A...A | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 97.3 34 GTCGCACCCTATTGCGGGTGCGTGGATTGAAAT # Left flank : AGTAGTTGGAGATTTCATGGGAATCTCCTAACCTGGTTACTAGTTGCAGGTTAAACGTTGCTGACGACATTCACCATGTAGATATAGAGCCCACCGTTTGAGTCTATTCGCTTAACCATAAATAACGGGAAAACCTCCAGTTAATTTACCGATCTTGACCTTTGGAGCCAATTTAACTGGAAAAGTTCCATCTATTTCGCGACCTAATGGCCGATATACGCAATTTCGGTCAAATTAACGGGAGGTTCTCCAGCTAATTTCCCTCAGCAGCCGCATAGGCACCAAATTAACGGGAGGAATTCCCGTTAATGATAAAGCGGCATATCCTTTTGGTGCGAATGTGAAGCGAACATGATTTCCTAGGGGGATTCGCACCGAAATATTTTACTTTAGCATCCTTATTTGCATAAAATAAACAGAAAATTAATCACTTATTTGCTTAAAGCCGTGATTTTGTAATTTTTAAAGCTACTTTTTAACAGTATATGTTAAAACACGCT # Right flank : AAATAAATCGTGACCAACCAGCGTAACGATTAACAAGTGCTCCACCAGATAACTTTAACTACCATAAAATTCCTGCAAATCTTCATCCTTTGGAGTTGAAAGTGCGGCAGGCACCTTCATTATTTAGAATTACAGGTGTCAGAGTCGGGAGCTTCTCAACTTTTGCTAATACTGTTATGACGCTTCGGACGCAAAATTAAATATTTTTAAATAAGGCAGCCCAGCAGGGCTGTTCTTTTTTTACCCAATAGATGTGCACACAACATGGGGACTGACGACACACACTTGAAAAAAAGCAATAAACATAGAATAATGTAGAAATTTGGAAGGGGAATTTAATAGTTCTATAGAATTAGATAGTTATCGTTAGAATAAATATTTTGAACTAATTTCCGTAGGGGAGGCAGGGCTATGGAATTTATCGCTCATATCCGTGAAAGCGACCGGGGACGACAATCCCTGAGTGCTCATCTGCACGGAGTTCGGGAGTTGGCGGAATC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTATTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 149251-150158 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORZ01000009.1 Paenibacillus faecis strain J25TS5 sequence009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 149251 32 100.0 35 ................................ CCCGTATATCCGAATCCAAGCAGCGTCCGAAAAAG 149318 32 100.0 38 ................................ ACCGAAGTCGACACGGTTTAAAGCAGCCTGAACAGCAC 149388 32 100.0 33 ................................ CGTCCAGATCGAGGACGTTAAACTTATAGGTCC 149453 32 100.0 35 ................................ AAGCACCACCCGGATGATAAACCTAGAGATAAGCC 149520 32 100.0 34 ................................ CCCATGCTGGGGCGCGCTGCGTAAATCTCCAGGT 149586 32 100.0 33 ................................ GGCGTAAACTGCCATTTGAAGCACGTAGCCGTA 149651 32 100.0 37 ................................ AAGTTTTTGTAAGTCCAGGTTACTCATCGAAGATCCC 149720 32 100.0 35 ................................ CTAATGAGGATGATCAAGGTGGTAATGATCGTCCG 149787 32 100.0 34 ................................ AGAATCGTTTGTAGGGCCGATACCTGGACTTTAA 149853 32 100.0 34 ................................ TACGAACGGCTGCAAATGGGAGACGGATTGAAAT 149919 32 100.0 38 ................................ AAAGACGCCGGATCATCGCGCGTAATTATCGGAATTAC 149989 32 100.0 38 ................................ TTAGTAAATTAAAAAGAGCGAGGCAAGTAGAAATTCCA 150059 32 96.9 37 ...............A................ AACGTACCGGAAACTTGATCATACCACTGTGTAGGAC 150128 31 78.1 0 ..............C.A.......-.A.GCT. | ========== ====== ====== ====== ================================ ====================================== ================== 14 32 98.2 36 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : GGATGAGTACCCTCCATTTTTATGGAAGTAGGTGGATCGGATGCTGGTACTGATTACTTATGATGTAAGTACCGTTGATGCAGCAGGGCAAAGAAGACTACGCCAGGTTTCTAAAGCATGTCAAAATTACGGACAGCGTGTTCAAAACTCCGTATTCGAGTGTATCGTTGATGCGGCGCAATGGGCGACACTAAAAATCAAGTTGATGGAACTCATTGATCCGGAGCAAGATAGCCTTCGATTCTATCAGTTGGGCAATCAGTATAAGAGTAAAGTGGAACATGTGGGAATTAAGGCGGCCCTCGATTTGGAGGGCCCCCTCATTCTGTAGTGCGAATGTGAAGCGAACATAATTTTCCCGGGGGATTCGCACCATGAAATATACTTAATTTTCCATAGTATCCAACTGATTTGATGTATGAAGAAGGGGAATTTGTAAAGTTACGGATAATATTTAGCGATATTTTCATATCATTACTTATTTTATGCCGAAAATCGGA # Right flank : TCTTATCCAAGCGAAAACTTGACTCCGTCAAAATCATAATCCCGATACCTTCCCCTCTTTAGGAAACATCAACTCGTTTCCCGTGAGGGGGATTTTTTTGCCAAAAAATATTTCAAGCCGACAATATTAAAATCCTCTAAATTTATTCCGATAAAGACTTATTGCATATTCACACTTAAAAAGGGAAAGGCGGAGACAGCGGGGATTCACAGACAAGAGGACATCGGAACGTAATGAGAGATGGAACGTCGCTAAAGTTTATTTCATCCAAGAAGGAGCAACCCAGAATTGAAAAAGAACAAATGGTTATCAGCGGTTCTATCTATTGTATTGTCGGCAAGCTTTGTGCTGACCTCCGCTTATACGGGAACGCAAGTTGCGTATGCAACGGGTTCAATTGTTAATGTAGACAGTGTGGAAATTACCGGAGATATTGAGGAAGTGTACGTGGGCGAATCCGTGCAGATGACCGCCCGAGTGCTCCCGACCAATTCCACAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //