Array 1 3133-2138 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNL01000081.1 Corynebacterium bovis strain CUAMC1 - SMALL 81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 3132 29 100.0 32 ............................. ATCTGGGACGTCGCCGCCCGCAGATCATTCGT 3071 29 100.0 32 ............................. ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG 3010 29 96.6 32 ............C................ GCGGCGGGGGCGATTGGAGCGAGGTAGTGGGA 2949 29 93.1 32 ............C...............T CGAGGGCAGCGTTCGAGTCGATGTCGCCCCTG 2888 29 100.0 32 ............................. CGACTCCGGCCACGCCACACGAGCACTGTCGA 2827 29 96.6 32 ............................T CGGCACCGACGCCTGTGACAGCTGGAGAGCGT 2766 29 96.6 32 .....T....................... GAGGCGTGCTTCGTGTCGTTCAGGGCGGCGGG 2705 29 96.6 33 ............................T CACCCGCGGAGTCACGTTCCTCCCCCCCACTGG 2643 29 100.0 32 ............................. TCGGCGAGCTGCTGTGCACGGTCGGTGGGGGA 2582 29 93.1 32 .C..........................G TTCCCGTCGCCGCCGTAGCCAGTGGTGAACAG 2521 29 89.7 33 A......G....................T CGACGAGAAGACATGGTACGGACACCCCATACC 2459 29 100.0 32 ............................. CCGTCACCCCAGCACGCCAACAGCACCGCCGC 2398 29 93.1 32 ................T...........G CCCCAGAACTCCCACTCGTTGTGGGTGAACGC 2337 28 79.3 82 ...........CC.G.......C..-..T GTGGGGAGCACCCGCGGGGATGACCCCGGGCCGCGCCGCTCCTGGCTGGAAGGGAGGACGACCCGCTAGACTGCAGACACTG 2227 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 2166 28 93.1 0 ...........-................A | C [2152] ========== ====== ====== ====== ============================= ================================================================================== ================== 16 29 95.1 36 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : GCACCCGAGGACGGGGCCGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGTCCCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAACGGGTGCGTGGTCACCTCACGCGCTGGCTCTCAGAAGTGGCGACAGGAGTGTATGTCGGCTAGGTGAGTGCCCGCGTGCGGGATGAGTTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACATACCCGACCACCACCTGTGAGCAGGGGTATGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGGCTGGTCCTGTTTCGTCGGCCGGGCGGTGACCGGACATCGCGGACCCGCGGCGAGTGGTCACGGGCCTCGCGGGAGCGTGGAGGCAGGACCAGGCGAGCGGATGGCCCGCACTGATGGCAGGTACAGACGTGAAAGGGCTGATCGACATCGAATGAAATCTGGCTTCTCGTGTACTACCATCCCTGGTCAGGAAGT # Right flank : CCCCCCCACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCACCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGTCTCTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGTCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGACTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGACG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //