Array 1 158-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLF01000027.1 Enterococcus termitis strain DSM 22803 Scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 157 34 100.0 34 .................................. AAGATATTAGATATTTTAGACGGTCTTATTGATG 89 34 100.0 34 .................................. CATCAAAAAAATTCCCATTGTATGCAGAGAAACG 21 21 61.8 0 .....................------------- | ========== ====== ====== ====== ================================== ================================== ================== 3 34 87.3 34 TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Left flank : GCGTTTTGAATTTCTACAAAAAACATGGGGAAAAGAAGAGGCGCAATTGTCGCTTGATTTCGAAGAACCACTTTTAGTTGCTGAAGAAAATCCAGAGATTTTCGAAGAGTATGACCAAGTCGTTTGGCAAAAGCGAGCTCTAGGAGAAGTAACGCATATTTTCAGTCACTTAAAATGGCATGTGTTAGTTTTTTATGGACGACAAACAGGGACGTTGACCACTAATGAAAATCAAATTTGGTCAACAAAAGAAGAATTTTCAAGTTATGTTTTTCCAAAACCGCAACAAAAAATGGTAGAACTTTACAAGAAAGAATCAAGAATAGAAGAATAATTTTTGGTGCGAACCCCAAGTGCACATAAAATCGCTAGGGGATTCGCACCAAAATTGCGGTCAATTTAGTAGTAAAACGAGGCTTTTTCTAATTCTATTTTAATGTTATACTGTTTTAAGAAGTGAAATTGGGAAGATATGTCATGTATTTTGACCAAATTCACAG # Right flank : G # Questionable array : NO Score: 4.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched TCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 57-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLF01000035.1 Enterococcus termitis strain DSM 22803 Scaffold35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 57 33 100.0 34 ................................. GTCTTTCATGCGCTCGCGTAGTCTTTTCATCTCT 124 33 100.0 34 ................................. TCTGTATACGTTGACAGGTCCAAATCTTCTTTGG 191 33 100.0 36 ................................. AATCGTGCGGAGCAGTTTGCTGCTAAAGGGCGTAAG 260 33 90.9 35 A.................T.......C...... GGTGTTATTAGTGGGCAAATTCTTTCCGTTCTTTT 328 33 84.8 0 ......................ACAT...T... | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 95.1 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : TTAGAGCTAGTGGATTGAAATCTCATTTGTCGAATCTAACCAAGATGCCGCTAAAAG # Right flank : TGCTATAGCCAATTGAGATTTAACTTCCTACCTTTATACTTTAGTTTTTGAACATATTAATATAGACATATCACCTTCTCCTGATTTTTTAAAGAATGAAATAATCATAGTTGGTTTTAACTTCTTTATAGCACTATTAGAATTATTAAACACAAAATCTTCTAGCACATTATTGATAAATCCTGTATCTTCATTGATATCCTGTATTTGGCAAAATACTTCACCGTCACCTACAAGTTCAAATTTGTATTCACCATTTATTGAATCTGGAACGAAAAAGTTACCATAACTATTTTTCAGATGAATAGTTCCCTCTTCTTCAACAGGTAGATATTTTTCTTTTGAGGGTACTAGGTAAACTGAACTTTTTTTAGGGGTTTGAAATTTATTCGTATCGTAGAATGCTTGATTACGTACAATATCTTTTTTATTTAAATTTTCATTACCTAAAAATAATTCTTTACTACTTGTTTCAGATACATCGTAATATCCTGATGACA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4832-5349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLF01000035.1 Enterococcus termitis strain DSM 22803 Scaffold35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 4832 33 100.0 37 ................................. ACTAAGCATATAGGAATTGATTTTTCAGAAAGCACAG 4902 33 100.0 37 ................................. TCTTATTCGCCAAAATAAAGATAGAAGGGAGGGACTC 4972 33 100.0 37 ................................. CAGTTTATATAGCTTAGGTGGTGAGATCGTGGCTAGG 5042 33 100.0 37 ................................. AATGCTTGCTTTGTTAAATCTGTTTTTGCCACCTACT 5112 33 100.0 33 ................................. TCGATCCTAAGCCATTACCTAAGAAAGCTGAAC 5178 33 100.0 38 ................................. AATTAATAAAAGAGTGCTAACTTACAAAATTATTGACA 5249 33 100.0 35 ................................. AGAGTGCTAATGTCCAGCTATATAACCGATTAATG 5317 33 90.9 0 .......................AA.......C | ========== ====== ====== ====== ================================= ====================================== ================== 8 33 98.9 36 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : ATTTTATGGTCAATTTTATTTTTCATTTATTTCGAAATAATTTAAAATATAAAAATTGATTCTTTATCATTTACTCCCACAAGCTTCGGGGACAAATAATATAAGTTTACGAGAAGCTAAGTTTGAGATCTTAGTCTCTTTAATAAAGTGTCTTTCTCAGAGACTAGACCTAAGATAAAAAGTCTAAATCTAAAACAGGAAAATATGGAGGAACAGTTAATGTTGAAAAGATAGAATCAATATGTAAGTGATTAAAAAATATTCAGTTAGGTGGAAATACAACTTTTGGTTGTGGTAAAATAAATATAACTATTATTTAAAGATATAGGATTAAGATTTTGGTGCGAACCCTAAGTGCACATAAAATCTCTAGGGGATTCGCACCAAAATTTTGCTTATTTCAGTAGTAAAAAACAGTTTTTTCTAATTATATTTTAATGTTATGCTGTTTTAAGAAGTGAGATGGGGAAGATATGTCATGTATTTTGACCAAATTCACA # Right flank : CCATATTTAGATAAAGTATAAATAGATATGCTCGTAGATTGAAATACTAATTCTGTCGAAGAGTCCATTCTATTTTTACTGCCCAGTTCCATTTCACCCTCAAAAAAACAAAATAGGTTAATATTTCTAATAGATATTTCTCTTTGTCATGAGAAATAAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTGAAATGATATCGGTGTAATGAACACCCAAACGAAGCGTAATCAGCTTTGATGCGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATTCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGCGAGTATTCACTGATTGGCGTAAACGATCATACTTTGGTCACAGAGTCTGATGGTCGCCGATGGGTTACTCGAGAACCAGCAATCGTTTATTTCCATAAAAAATACTGGTTCAAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23804-25576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLF01000004.1 Enterococcus termitis strain DSM 22803 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 23804 33 100.0 34 ................................. CCCAGAAACAGTAAGGCAAGCTAATGGGCATTTT 23871 33 100.0 37 ................................. AAAAAATGAAATAAATGTAATTATACAAACAACGGTA 23941 33 100.0 34 ................................. GCTTTTTCGGCAAGATCTCACATGCCTGGTCAAT 24008 33 100.0 34 ................................. TTAGTTAATTATAAATCGTTAACTTTGGGAGGCT 24075 33 100.0 35 ................................. AAAATTGGATAATTAAGAATGAAGTGTACATGCAG 24143 33 100.0 35 ................................. AGCAAACGCTGCATCTTGAGCATCTCTTTGCATTG 24211 33 97.0 36 ........T........................ ATTTTGAAGAGCGGGAAAATGAATTCATGAGGATAA 24280 33 100.0 35 ................................. AATAATCATGAACCCTTGTCAAAAAGATAAGGGTT 24348 33 100.0 35 ................................. TGCTACACAGCTTACCAAAGAAATTAGTTATTTAT 24416 33 100.0 34 ................................. CCCCTCCACTGGTACAACCTCACCACCGATAATC 24483 33 100.0 34 ................................. GGAGATAATCCTTTGATGCGTTGGTTTACTAACA 24550 33 100.0 35 ................................. TCAATCAATACAGCACTTATTGTTTCTGTCTCTAA 24618 33 100.0 36 ................................. TAACCACTGGCAAATCACTAGGGGTGGATAAATCGT 24687 33 100.0 35 ................................. CTCGTAACGTATTGTATCCATATTTATGGATACCT 24755 33 100.0 35 ................................. TTTTCTTCGGGTTTGTCTATATTGTGGGCGAACTC 24823 33 84.8 23 ............................TGCGC TTTGCTAATTGATCCAGATACAT Deletion [24879] 24879 33 100.0 36 ................................. AACTACTGTTGGAATAAAATCTTTCACAATGAAATC 24948 33 100.0 33 ................................. ATTTCTACAGAACCTCTATCACTCAAAGATGCA 25014 33 100.0 35 ................................. TCAATCATTTTTAGAGCATAGTTATCGTGGCTGTA 25082 33 100.0 33 ................................. TTCTTTCGATTCTTCTGTTGGTGTTTCCTTCAC 25148 33 84.8 23 ............................TGCGC TTTGCTAATTGATCCAGATACAT Deletion [25204] 25204 33 100.0 36 ................................. AACTACTGTTGGAATAAAATCTTTCACAATGAACTC 25273 33 100.0 33 ................................. ATTTCTACAGAACCTCTATCACTCAAAGATGCA 25339 33 100.0 35 ................................. TCAATCATTTTTAGAGCATAGTTATCGTGGCTGTA 25407 33 100.0 33 ................................. TTCTTTCGATTCTTCTGTTGGTGTTTCCTTCAC 25473 33 100.0 37 ................................. ACATCATTGATCGTTTCTACAAATGTATTTACGACCT 25543 33 87.9 0 ..........A............CTT....... | A [25565] ========== ====== ====== ====== ================================= ===================================== ================== 27 33 98.3 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : TTATACGAAATATGGAGATGGCGGAGCAGATATTTTACCGTTATTTCGTTTGAATAAACGCCAAGGAAAAGCACTTTTGAAAGAACTTGGAGCTCCTTCTGCGCTTTATTTGAAGGTACCAACAGCTGATCTTGAAGATGATAAACCACTTGTGGCGGACGAAGTAGCTTTAGGTGTAACCTATGATGATATTGATGATTATGTTGAAGGAAAAGAAGTTTCTGAACAAGCTCGTGAAACGATTGAAGGCTGGTATAAAAAGACACAGCATAAACGTCATATGCCCATTTCAATCTTTGATGATTTTTGGAAGTAATCCTCCATTAAAAGTTCTTTCGTTTGGTGCGAACCCTAAGTGCACATGAAAACACTGGGGGATTCGCACCAAAAAAAGAGCAAAAAGACGTTGGTAAAAGGCGTTTTTCTCATTTTTTTTTAATGTATGTTCTTTATTAAAGTGATTTTCGATGATTATGTAATGTATTTTTGTCAAAATCATG # Right flank : TTCTGTATCAATGATCGATATTTCTTCACCTTTTGATTTAGCTCTCTTTAAGTCAACCCAAGAAAGACGAATTCTCTCGTCTTTCTTTTTTTGTTCAATAATCATTTTTTTGTTCGAATGGTTAAAAAAAGTGTAAACTTGATCTTATAAACAGCAATTATCTTAAAAGTAATCTACAATTAATTTAACTATACACAAAGAAAGTGAATTGGGTGAACTATGAAAAAATTGTTTAGAAAAAAAAGGAACATCGACAACGAAACGTTTTTTTCATCGGAGGAAAAGCAACAAACTGTAACGAATGAAACAATTCGAATTCCAGATACAATCAAAGGACTATCTGATCAAGAAGTGCAGCAGTTGTATGCCGAAGGAAAATATAATAAAGAAGTCGAGGATCTGTCTAGAACGACCAAACAAATTATTTTAGATAATTCTTTGACCCTATTCAATTTTATCAACTTATTTTTAGCGGTAGCTGTTTTTGCTGTAGGTTATCC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10411-11584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLF01000005.1 Enterococcus termitis strain DSM 22803 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 10411 33 100.0 33 ................................. TGACGTTACTGTAGAGAACGATGAAACATTATT 10477 33 100.0 35 ................................. TCTAAAAACTTTAAATAAAAATCCAGTGTAAGCCC 10545 33 100.0 32 ................................. CAACTACAAAGCGTGAACTAGCTTTACTAGCA 10610 33 100.0 35 ................................. TTAATTTCGAATGACACATTACAACTCGGAGCTCG 10678 33 100.0 33 ................................. TTTACGGGAGGGAAAGACCAAAAATTATAAATT 10744 33 100.0 36 ................................. ATTTATTTCTCCTCCTCCACTGGCTCAATCCCCATC 10813 33 100.0 35 ................................. TTATTATTTTAACAGTGGTGTGCAGTGCGATTATA 10881 33 100.0 34 ................................. TCCTAGTCTAGAATATGAGAAATGCTATCTGCAT 10948 33 100.0 35 ................................. GCATCAACTCCATAACCACCATACCTAGCGATTAT 11016 33 100.0 34 ................................. CAAATATAAGACTTCGCAAGTCCTGTGACATAAT 11083 33 100.0 36 ................................. TAGTCTAGTTGGCTTGTTAGGTGGTCCAGTGGTCGT 11152 33 100.0 34 ................................. GCGAATGCCAATCTTTTTAAACTTTAATAGGAGG 11219 33 100.0 34 ................................. TTTAGTTGATTTTTGATAATTTGATCAGTGTCTA 11286 33 100.0 34 ................................. TTTAGTTGATTTTTGATAATTTGATCAGTGTCTA 11353 33 100.0 33 ................................. TTTAATAGTCACAAAATTAAAATAAAGACAAAT 11419 33 100.0 34 ................................. CCAGTGCCAGCAGTACTGGCTATAATTACGGCGT 11486 33 97.0 33 ..........A...................... AGGTGGTGTACGTATGGCGTACGTCAATCTGGA 11552 33 81.8 0 ...............A.......AA.....TTC | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 98.8 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : CGCCATTTTTATGGAAGTAGGTGAGAAGCATCTTAGTATTGATTACCTATGATGTTGCAACAAGTTCTGAAAATGGTCCGCGCCGTTTGCGTAAAGTAGCGAAAAAATGTCAGGACTATGGTCAACGAGTGCAAAATTCTGTTTTTGAATGTGTTGTGGATGCGACAGAATTGACGAAACTAAAAAAAGAACTCATTGATTTGATCGATGAAGAAGTAGATAGTCTGCGAATTTATCGTTTAGGAAACAACTATCAAAATAAAATCGAACATATTGGCGCAAAGGAAAGCTTTGATGTAGAAGCACCGTTAATCTTTTAAAGATAAATTTGGTGCGAACCCCAAGTGCACATGAAAACACTGGGGGATTCGCACCAAATTTAGGGTAGTTTTAACGCTTAATCAAGCTTTTTTCTAATTGAAATTTAATGTAGTGGTATAATATACTAGTAATTAGGTGAAATAGTTAAGAAATGTATAGTTAATTTGACTAATTTCACA # Right flank : CGATGGTTCTAATCACTTCTACCACTTTTTATATTAATTAAATTTCAAACAAAACAGGAGAATCAAATGCGTTATTTATGGTTATCTATAATCTTCTTGGTCTTACTTTCTTTTCATCGAGGATGGTATGTTCTTTTAAATAAAAAAATGAAAACTAATTATTTTTTAGTGAAAATCATCTTATCTAGCTTTTTAGCCTGTTTGGCTGTTATTCTTTTTGTGATGCTTTTATTCGGCAGTTTTATTGCCCTCTATATTCAGGACATAAATATGTTGGCAGGAATAATATACGGAATCACGTTATTGAGTTTGAAAATCTATTTACTATATATCATTTTATCCGTTTTAGTGTGCAGCCTTGTAGAAATGAAAAATAAGAGAAAAACTACAAGAAGCAACAAGTAGTTATTGTGGCTGGTACATTGATGATGTAGCCAGCTTCTTCTTATCTGCCAGCATTAAAATGAAGATTTTTTCATGATGATTTGATTGACCTCTTC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //