Array 1 8409-8684 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEBB01000019.1 Lactiplantibacillus plantarum strain CIF17A5 CIF17A5_contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8409 28 100.0 33 ............................ TACATGGTATCAACCGTGTCAACAATCGTATTA 8470 28 100.0 34 ............................ CTAGCCACTGACAATCCGCAATTAGGTAATAATG 8532 28 100.0 33 ............................ TCAACAATTGATACACTCAGTCAAAAGGTTACC 8593 28 100.0 33 ............................ TCCACCAGTTACAGAGGAAGACATACCTTTGAT 8654 28 100.0 0 ............................ | GTA [8676] ========== ====== ====== ====== ============================ ================================== ================== 5 28 100.0 34 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCGGGGCTGGCTTTGAGCTGGTTGGTCATCGTGAGACGGAATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCTATGCTTCACCGAGCTAAAGGGCACGGCGTTCGTTTAAGTCGTGTGACATTTGAAGGGCTCCTATGTGTCAAGGACCTACCGACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTAATGACAGTCATTCCTGAAGTACAGTGATTGACTTTCATCGGTGTTTACTGGATTGGTGGGCCCGGAACCAGTGCTGGCGAACCAGGTATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGTTATCCTCGAAGTCAAGCTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGGGACGGGATCTGTCAAGT # Right flank : CTTGGCTTGAATGCAGCAGTGACCCGTACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGAACCAACGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTAAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACGCCGGCGAACATTTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAGGTGATGAGCGAGATCAGGAAGATCAGCGTTGAGACAAAGAAGAATAGGGACCAGATGATGCTCAGCGTTTGATCAGTAATAAAAGCCCATTGCTTCAAATACTTGCCGGGATGACTGGCAACTCGTTTAAAGTTGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 157924-157468 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEBB01000012.1 Lactiplantibacillus plantarum strain CIF17A5 CIF17A5_contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 157923 28 100.0 33 ............................ CAGTTTTACAAATTTACCAGCCGCCGTCGAAGA 157862 28 100.0 33 ............................ TAATACGGGTAAAGGCGCAACCGTTGATCCGCG 157801 28 100.0 33 ............................ CCTGCCAGGGAGATAATTGCAGTTAGTAGGCTT 157740 28 100.0 33 ............................ TGGTCAATTAACGGGTATCGCTGAACAGGTTAA 157679 28 100.0 33 ............................ TCATTATCAACATCTCCATCTTTCTTCACATAC 157618 28 100.0 33 ............................ TAAAGTGTTGAAAAAATCAAGAACATTCTTGTT 157557 28 100.0 34 ............................ CGACCTTGATAAATGGGTGCGCTATTCCTTGGAG 157495 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ================================== ================== 8 28 99.1 33 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : GAAAATCGGCGCCCAATCGACCTTAAAAAACTAATCAAGAAACGTGGGACATTTGCTTGGGAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACGATATCTTAGAAACCATTGCGGGTTTGCTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATTGAGCAGCATCATATGATTAGCAAGGTAGTTATTGATGGATGGGAATGAGTTGACGTGTATTACGGCTCACGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTGTTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : AGGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGATGGTATCAGACTCGCTTATTTTAGCATCGCCCCCCGCTAAACTACCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTAAAATTGGCATTTAAAACACCACTGGCTGATCAGATGCGCCCGCAATCATTGGAACAGATGGTCGGACAACAGGATCTGTTGAAGGCAGGCCAGCCACTACGCCAGATTATTGATCAACATGTTAATATTCCACTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGCCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160728-160334 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEBB01000012.1 Lactiplantibacillus plantarum strain CIF17A5 CIF17A5_contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160727 28 100.0 33 ............................ CCAGTCCTCTCGTGTTTGTGGCGCAACATTAGT 160666 28 100.0 33 ............................ CAACTATACCAGATTTTAATTATTTCCCGTCTT 160605 28 100.0 33 ............................ TATCAGTAATCATGTCAGCCGTGGCGTCTAATA 160544 28 100.0 33 ............................ TCTTCTTTTGCCAAAGGTTTATCATCAACAAGT 160483 28 100.0 33 ............................ CATTAATTCCATAAGCCGCCCTGGTGCTTTAAA 160422 28 100.0 33 ............................ TGGCGCAGTTGCCGGTTTGATTGTTAGTGCGGC 160361 27 89.3 0 ...............G.A...-...... | T [160336] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 CTATTCCCCGTACATACGGGGGTGATCC # Left flank : TAATAATTGCTGCGGGTACAAAAACCACGCCACGAGCATCACTGACTCGAATCGCACTATCTTGGCGATCGAGTTTGGCATGTTCCAAGTATAAAAATGTTAATCGATCATGAATTCGACTCAATTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAATATCTGCATCAAGTTCACACAGTTAACTCTCAAAAAACAATTTTTCCATGAGTAAAGAACATAATGCGCTTTTAAATATAGGATAAGTATTGGTCAAACGCGAAAGAATACGCTTGCATCTTGCTGTAACCCAGATGCTCAAAAAAACTCAGAGTATCATATTTCATCAAAATCAAAATTATCGCGCCTTCATAATTATAATATCATAATTCATTTGCCATAAAAAACACATATATGTATACTTATATGAGATACAAAGTTAACTGAAAATTGCTCATCAGCTCTTTCATATTATTGATATATCACCATTTCTTTAGT # Right flank : GCCTATTTGTTCGACGGGAATTTCTTCCCCGCTACAGGAAACCCATATTTTAATAAAGATTCAAGTCATCCCTAATTATACTGTTGAACATGAATCCAGTTGGATCCGGTTAGCCATTCGCAACATATATAGAAGAAGGTGAAAAAAGTGTTTGAATTACTTGAGGCTATTATTGACATCATCAAACATTTTGGAATGGCACTTGTATTAGGATTTTTAGCATATGCTCTAATTTATATAATTATCGGTGTATTTACGATGAATTAGATACGCTACTTTCCATAACATGAAATGGAATCTTCAGTTACTCTTTGGCGTACTTTCTACTTACTAATGCTTAATTTAATCCTTTATCTTAATCAAAAAGTATTGACGAAATATAGACATATGCAAAATAATTTCAAACCAGTCAAGATCAAACCAACTTGCTGGCTATATTTTCTAGTCGACCCATTTCGTTTCACATTTTAATTCAGCCTGATTATTGCAATATTTTCTTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTACATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //