Array 1 132853-131508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWO010000003.1 Clostridium tetanomorphum strain DJ011 NODE_3_length_263421_cov_40.333131_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 132852 30 100.0 37 .............................. AAAATAAATGATAAGAATAATGTTCTAAAGGAAGACA 132785 30 100.0 35 .............................. AGAACAAAGGCTTGAAAACTGCATGGGAGACAGGA 132720 30 100.0 34 .............................. AAGGCTTTGATATGGATTCTTTAATTCCAACCGA 132656 30 100.0 36 .............................. TCTATAGTCATATCTGACAACATATCTGTAAACTCT 132590 30 100.0 35 .............................. AGTACCGTCTTTTCGGGTCTGTCCTCGTTGTTCAT 132525 30 100.0 36 .............................. TAAACTCCATTTCTAACATAACTATTTATTATATCA 132459 30 100.0 34 .............................. AAGATAATACAATGAGAAATTGAGGATATATGGA 132395 30 100.0 36 .............................. AATATTAGCAAAGAGAATAGATTTATATAAAAATAA 132329 30 100.0 38 .............................. GATAGTGAAAAGCTAAAGTCTGTACAAGAATCTTTAGC 132261 30 100.0 35 .............................. CACGGGTACAGCTATGAACAGCTTGTGACTGATGA 132196 30 100.0 37 .............................. CTGTCATTCTTGACTTCTTCAACGGCTTGTCCTGCGT 132129 30 100.0 35 .............................. TTGATTCTGGGCGTGGAATATACCTTATCTGGAAA 132064 30 100.0 36 .............................. TAATAACCGTAGAAAGGTTCAGTCAGAGAGACTGAA 131998 30 100.0 36 .............................. CTTATAACTTCTCCTGGATTATATGTTATATCTATT 131932 30 100.0 35 .............................. TGTAGTGGAATTTCAAATTCTTGTCCAGATTGAAA 131867 30 100.0 35 .............................. GTGAGTACAATGTGTGCCTTGTCCGTAAGGCTCAA 131802 30 100.0 36 .............................. TGTTCTGGGACTACTTTTTCCAAGATACAGGGTGGA 131736 30 100.0 36 .............................. TTAATTTGATTTATAACTTTGTTATTTGCATCTCTA 131670 30 100.0 35 .............................. AAGAACTACTGATGCTTGATAGAGAATTAAGTTTT 131605 30 96.7 36 ................A............. CACGTTGCTTTACAATGATAATAAGGTCTTTCTAAA 131539 30 90.0 0 .C..............T..........T.. | TA [131513] ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.4 36 GTTGAACATTAACATAGGATGTATTTAAAT # Left flank : TAGGCAATACTGAAAATATTCATGAAACTTTAATAAAGATTTTATCCAATAAAGCAATCTTTGGTGTTGATTTATATGAAGTAGGTTTAGGTGAAAAAATTGAGAACTACTTTAAAGAATTAATTGCTGGAGAAGGTGCTATTCGTTCAACCTTAAAGAAATATTGTAAATAATTTATATGCAAAGCGCTGAAAAATTTGTTTTTCAGCGTTTTGTATTTATTAATTGGAAATATTTTTTTTACTATTAGCATTACAAAAAATTTTCAATTAAGATTTTTATAGAGCAGCAACCAAAAAAGAAAAATCTATTTTTATAGCAATTTTACCAAGTGAATTGAAAAACAAAAGTAGTGTAACCTGAGTTATATCAGTGGTTTATATAGGAATTTTTATAGAAATTTCTATTTTATAAAATCACCTGGTAAATTTTCTAAGAAACCTTGAGATTTCAATGGTTTTGTGCTATTCTTAATTTTAAGGAATGTTGATTTTACAGTG # Right flank : ATAGAAAAACTTCTGTATCTATGAAAAGATTAGAAAGTTTTTTGATGTATTGAGGTAAATAGAATAAAAATGTTTAATCAATCTTCCGCTTTTATGTGCTATATAAAAGCGGGAATTTTTACTTTTGGAGAGATTTTGAATTGTTGAAGTTAAATGCTGGTTTTAAATTAATGATTAAGCACATAGATTTATTACTTTGAAATTTTACATACTATTGTGTTATGTTTATAATAATTAATACGAAATTAAAAGAAGTGGATAAGTAGCTGGAAAGGGAAGATACAATGGATATAGTAAAAATAAAGGAAAAACTTAATTCAAATGAATATGATTTTTTAAGAAATAATTATAATTTAAATAATAATATAATATTGCTAACTTTAGGTGGAAGTTATTCTTATGGACTAAATAGTGAAAATAGTGATCTGGATATAAGAGGTATAGCTTGTAATACAAAAGAAGAAATATTAACTATGAAGTGTAGGGATAAACCTTATGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 51307-51016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWO010000018.1 Clostridium tetanomorphum strain DJ011 NODE_18_length_86394_cov_45.499079_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 51306 30 100.0 34 .............................. TGCAAATTGGTAGCGGATTACAAATCTTAAATTT 51242 30 100.0 36 .............................. GCGAAATTTATATGTGTATCACTCTTAGCCTTTCCA 51176 30 100.0 36 .............................. TAAATTTTGAAGAGTTTGCAGAGCTGCATAAAATCA 51110 30 100.0 35 .............................. TCCTATAACAAAAGGTAAAAATGTAAAAGTTACAG 51045 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : CTAGATTGAAAAGAAAAGTTAGTTATAGAACTGCAATTAAGTTAGATTGTTATAAGCTAATTAAATTTATGATGGAAGATAAGGAATTTATTCCGTTTAACCTTCAGGAGAAAATGTAAATGGGTAAAAATCTGAATTATAATTATGCTTTTCTTTTCTATGATGTTAATGAAAAAAGGGTTCAAAAAGTTTTTAAGGTTTGTAAAAAATATTTATCTCATTTTCAAAAGTCTGTTTTTAGAGGGGAAATAACTCCATCCAAGCTAATTTCTTTGAGAAAGGATCTGAATAAGGTTATTGATAAAAGTGAAGACTTTGTGTGTATTGTAAAATTATTAAATGATAATGTATTTGGTGAGGAGATTTTGGGAGTACAGAGCAACAATACTGGAGAGGATTTAATAATTTGATTTTACCAGGTGAAATATATTTTAAACAAACCTTGAGTTTCCAATGGTTTTGTGCTATTGTTAATTTTAAGGAATGCTGATTTTACAGTG # Right flank : ACTGTTCTGTTGCAGCTAAAACATGGTATCAATGACGCCGGGGTCATTACAGAAACTGGAAAGTTTTTGTATGTTTGAAATTTTTGGTGTTTTAACAGAAGAAGAAAAACAATATGTTGTAAATAATATTGTAAAACAATTTTCATCACAAGAAAAATATAAAGAGTAAGCTTCAACTGATTTTAATACAGATTCTGATAAGATTAGTGCACCAATTAGATTGGAGAATAGTTCAGATGTAATAAAGGATAAAGTAGATAAAGGACAAGCAACTATTGACCATAAGATAAAAGTGTGAAAGAAACTAAAAAAAAGCAGAAGCATTTTGAGAATTGTCTAAAAAATATAAAAATAAAGCTAAGGAAATCGAAGCAGAATTGGCAATGTGCTATTTAGGAGGCATAGAGACAAAAAAGATATTTAAAAAGCATTTTCTTTGCTTGTTAAGGAGTATATGCAAAATCAAATAAAGCATTACAATTATTAGGTGATGATTATTA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 61996-61043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWO010000018.1 Clostridium tetanomorphum strain DJ011 NODE_18_length_86394_cov_45.499079_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 61995 30 100.0 36 .............................. TTATCTACTACACAGTTATAAACTTTTCTAATATAG 61929 30 100.0 35 .............................. TTTCCTGACTTACCTGGTTGCATAACTGAAGGTGA 61864 30 100.0 36 .............................. GTTAGAAAAGCTAATTATGAAAATAAATCTGAGTTA 61798 30 100.0 37 .............................. GTTCTTTTCCGATAAACACTTGTCCGTCTTTTGTAAA 61731 30 100.0 34 .............................. CGGTGACTGCCAGTGCAGACAAAAGGATTGAGAG 61667 30 100.0 36 .............................. TAAAGGAAAATTACGGAGAAGATAAGCCAGTATTGG 61601 30 100.0 36 .............................. TCTTCATATACTACATTTATTTCGTGGTACTCTAAC 61535 30 100.0 37 .............................. AGAAACTATATATCTGATGTAGAGAATGGAAGATATA 61468 30 100.0 36 .............................. CCAAAATAGAAACCATAACCATTTTCATAAGTTTTG 61402 30 100.0 35 .............................. TATTGCTTAATAATAAAGAGTTCCGTATCTACATA 61337 30 100.0 35 .............................. TTATATTGATATTGAAAATAGTGAATATAGAAATA 61272 30 100.0 36 .............................. ATGCTACCGTATTTCTCTTCTAATTCACAAAGGGCG 61206 30 100.0 36 .............................. ATAAAGTTAACATGGCCGGCGGAGGGTCTGTTCTAT 61140 30 100.0 35 .............................. GTGGGTGAAGACAAATTAAAAGATTTTAAAAGAGT 61075 30 90.0 0 ...G...........A....A......... | TTA [61048] ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.3 36 GTTAAACCTTAACATGGGATGTATTTAAAT # Left flank : TAAATTTAAATTAAGTTGAACCTTAACATAGGATGTATTTAAATAAACCTTTTTTAATATCTATTGGCCAACCATTATTTGTTGAACCTTAACATAGGATGTATTTAAATTTGTTTTCGTTGCTACATAGTGCGTAGCTAGTAACTGTTGAACCTTAACATAGGATGTATTTAAATTACCTCCCAATATTTGTAATTAAATTCTAAGTTTTAGTTGAACCTTAACATAGGATGTATTTTCAAGTAATTGAAAGTTGAGAGTTGAGAGTGAATGAAAATTTTACTAAGAAGTCTCCTATTTTTTACAAATGGCAGACTATTAATTTTACCAGGTGGATTGAAAAGTGAAAGTGGCTTAAAGTTAATGATACAAATGGTTTGTGCAGTGTTTTCTATAGAAAATTGTATTTTATAAAATCACCTGGTAAACTTTTAAACAAACCTTGAGTTTCCAATGGCTATATGCTATTATTAATTTTAAGGAATGCTGATTTTACAGTG # Right flank : GAAATAGACAACTAACGGCAAAAATAGGAAAAGTAGATTAAATAATATGAAGTTTTTTATATTTATTTAATGATTTTTATTGTAGACATGTAAAGATGGCTGCGTATAGTGATAATATTTTTAGAAAGTATTAAATAAAATAGCTAATTCATGTAAATTAGGAAAAGATATATATACTTTAATCTTCATAAACTTTTTTTATAACAATTCCTTTTTTAAATCCACTTCGTTTAAGTTTTTTTCTTCTTTTTAAAAGCTCCTCTTCAGAATATATCAATTCAGAGGAAATTCCAAACATAATTTTAATTAAATATGTAAAATCTCTTTTTTTAGCATAATGTATATTAATTTTTAAGTTCCCGATAATATGTATTTAGCTGAAATAAAAAATCCATATAGAGATAATGAATTAACGACAAAGATATAGGACATTACTTAAAATATCAATAGCTATTCTCTTATATAGATATATACTTTAAAGTATGGTAATATATATTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 62876-62253 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWO010000018.1 Clostridium tetanomorphum strain DJ011 NODE_18_length_86394_cov_45.499079_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 62875 30 100.0 36 .............................. TTCCTAAAAATCTGTAAGTTATTCATTCTATCCTCT 62809 30 100.0 36 .............................. AGAATATCTTTCTTGGCAACTGCGTAAGGGTGGTAC 62743 30 100.0 36 .............................. CCGTGAGGAAAACAGAGAACAAATTACCTTGAATAT 62677 30 100.0 34 .............................. TGGTGAGGGTTCGTTCCATGACAGTTTGGAAGAT 62613 30 100.0 36 .............................. TAACTCCCTGTAAACAAACCGCTATAAACGACTTGA 62547 30 100.0 36 .............................. TTGTATAAATAGTATTTGATTTTAAATTTAAATTAA 62481 30 100.0 36 .............................. AAACCTTTTTTAATATCTATTGGCCAACCATTATTT 62415 30 100.0 36 .............................. TTGTTTTCGTTGCTACATAGTGCGTAGCTAGTAACT 62349 30 100.0 36 .............................. TACCTCCCAATATTTGTAATTAAATTCTAAGTTTTA 62283 30 93.3 0 ..........................T..G | C [62255] ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AACATATATATGCAGGTTTAACCATAACATGAGATATATTTAAATTAATAAACAGCTAGAAATAAACAAACTCACATAATGTTTAACAATAACATAAGACGTATTTTCAAGTAATTGAAAGTTGAGAGCTGAGAGTGAATAAAAATTTTACTAAGGAGTCTGCTATTTTTTGTAAACAGAGTTCTTGGCTTCAGAAGGAGTTTTTACTCCCACTTTGAAGAAGAGCAGAGAACCCAAATCTTTGATTTGGTGTGAATCGCTTTCACAGAGTGCGATGGGAGTATTAGAGCGGGTAGTCATCGGATAAATGGCAGATTATTAATTTTTCCCAAGTGAATTGCAAAATAAAAGTGAAATAAAGCTAACAATATTAGTGGTTTGCATAGTTTTCTAACAGGAATTTTTATTTTATAAAACTACCTGGTAAATTTTTTGGCAAACCTTGAGTTTCCAATGGTTTTATGCTATTGTTAATTTTAAGGAATGACGATTTTACAGTG # Right flank : TAATTGAAAGTTGAGAGTTGAGAGTGAATGAAAATTTTACTAAGAAGTCTCCTATTTTTTACAAATGGCAGACTATTAATTTTACCAGGTGGATTGAAAAGTGAAAGTGGCTTAAAGTTAATGATACAAATGGTTTGTGCAGTGTTTTCTATAGAAAATTGTATTTTATAAAATCACCTGGTAAACTTTTAAACAAACCTTGAGTTTCCAATGGCTATATGCTATTATTAATTTTAAGGAATGCTGATTTTACAGTGGTTAAACCTTAACATGGGATGTATTTAAATTTATCTACTACACAGTTATAAACTTTTCTAATATAGGTTAAACCTTAACATGGGATGTATTTAAATTTTCCTGACTTACCTGGTTGCATAACTGAAGGTGAGTTAAACCTTAACATGGGATGTATTTAAATGTTAGAAAAGCTAATTATGAAAATAAATCTGAGTTAGTTAAACCTTAACATGGGATGTATTTAAATGTTCTTTTCCGATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 65322-64961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWO010000018.1 Clostridium tetanomorphum strain DJ011 NODE_18_length_86394_cov_45.499079_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 65321 30 100.0 36 .............................. CTGGAATAACATGGCATAAAGGTTTTAAAGAGCCAT 65255 30 100.0 36 .............................. ATTTGTTTTAAAACTGAATATATATGCCATAGTATT 65189 30 100.0 36 .............................. TTATTAATGTTTTCTAAAATTAGTTTAGGTGGAGTA 65123 30 100.0 36 .............................. TCTTATCCAAAACTCCTAATGATTTTGCCATGCTAA 65057 30 100.0 34 .............................. TGACAATCAAGTAAGAATATTGGGAGTGATTTTA 64993 30 96.7 0 ............T................. | TTA [64966] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 36 GTTAAACCTTAACATAGGATGTATTTAAAT # Left flank : TTAATGGAGTTGAACCTTAACATGGGATGTATTTAAATTAACCAATAGGTAAATATTTTTCCCAACTCAAATTTGTTGAACCTTAACATGGGATGTATTTAAATGGAGTAAAATATTGATTATCTAAATAAAAAAACCTAGTTGAACCTTAACATGGGATGTATTTAAATGAATTATGTAGATAGTAGCCTAAGTTATTCTAATGTGTTGAACCTTAACATGGGATGTATTTTCAAGCGATTGAAAGTTGAGAACTGAGAGTTGAGAGTGAATAAAATTTTACTAAGGAGTCTGCTATTTTTTATAAATGGCAGATTATTAATTTTTCCCAAGTGAATTGCAAAATAAAAGTAGATTAAAGCTAGTAATGTCAGTGTTTTACATAGTATTTTCTATAGAAAATTACATTTTACAAAATCACTTGGTAAACTTTTAAACAAACCTTGAGATTCCAATGGCTTTGTGCTATTGTTAAATTTAAGGAATGCTGATTTTACAGT # Right flank : GAAATAGATAATTAACGGCAAAAATAGGAAAAGTAGATTGAACAATATGAAGTTTTTTACATTTATTTAATGGCTTTTATTGTAGACATGTAAAGATGGCTGAGTATAGTGATAATATTTTTAGAAAGTATTAAAGGAACCTTTATTAAGAAACTTATAAAGAATGTTGAAAAAGTAATTCCAAAAGCCCAAGAAAATTTAAGTATTGATTAAATACTATATGGATTAAAAGAACTGCAGTAGGAGCTTATGAAGCTTAAGGCTTAATGTAAATACAGGCTTAGATACAGAAGTCTATAATGGAGAGTATGCATGAATTGAAAAGGAAATAGAAAGTCTAAGAGAAAAAACAAAGAATTCAAGAAGCAAAGTTGGATGAGACCATGAAAAAAATAGAGAAGAAGAGATTGAAGATATTATAAAAAAGCAGAAATTAGTAAAAGAGTTAGAGAGATATTATAGGGAATTTGAATTCAAATTATTTATAATATAGGATATAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 66931-65585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWO010000018.1 Clostridium tetanomorphum strain DJ011 NODE_18_length_86394_cov_45.499079_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 66930 30 100.0 36 .............................. TCTTTTTTAAAATCTTCATATCCGACACCTGTGCAA 66864 30 100.0 36 .............................. ACAAACAATTACAAGGAATTTGGAAGAAATTGAAGT 66798 30 100.0 34 .............................. TGCAATGGAAACAATGCAAAGTGGCTCTCACATC 66734 30 100.0 35 .............................. GATTCTATTAGAACAGAAGTAAATAGAAATGTAAC 66669 30 100.0 38 .............................. ACTTAAATAATAAAGCTTGTCAACTCAAATAATTAAAA 66601 30 100.0 37 .............................. TAAATCGTGAATTGCTCCAGGAATGGGCAAATAACCA 66534 30 100.0 34 .............................. AAGCTATTCCTATAAGAATAGATGAAGCTAACAA 66470 30 100.0 36 .............................. TGTATTTCGTCAAGGGCACAGCTATAAACTGCATAG 66404 30 100.0 38 .............................. AGAGACGATGAAAAGGGAGTTACTAAAATTGATACTAA 66336 30 100.0 34 .............................. ACCCATATTTTATCCGCCACTACATATGCAATCT 66272 30 100.0 37 .............................. CCAAGTGCTATTTTCCATATTAACTTATTAGTATCTA 66205 30 100.0 36 .............................. ATTTTTGCAATCACTTTTTCTATTTTCTCTTTTGTC 66139 30 100.0 35 .............................. TAACATATCTCTCCGGTTTTTATCCGGTTTTAATT 66074 30 100.0 36 .............................. CTGTCTGCTCCAAAACTTTTAATACCTTGGCTAGCC 66008 30 100.0 36 .............................. GCTACCTTGTCAAAAACACAAGAAATGATTATATTA 65942 30 100.0 35 .............................. TTTATATCTTACATTTTTATTGCTCCTTTTTATAA 65877 30 100.0 34 .............................. AGAAAATCCAACTTATATAGAAGCTGTTAATGGA 65813 30 100.0 36 .............................. TAACCAATAGGTAAATATTTTTCCCAACTCAAATTT 65747 30 100.0 36 .............................. GGAGTAAAATATTGATTATCTAAATAAAAAAACCTA 65681 30 100.0 36 .............................. GAATTATGTAGATAGTAGCCTAAGTTATTCTAATGT 65615 30 93.3 0 ..........................T..G | C [65587] ========== ====== ====== ====== ============================== ====================================== ================== 21 30 99.7 36 GTTGAACCTTAACATGGGATGTATTTAAAT # Left flank : TAAAACAATTAGAGTTAAACCTTAACATAGGATGTATTTAAATCCGTTTAATGTTTCTAGTTTATCTCTTATTTGTACAGTTAAACCTTAACATAGGATGTATTTAAATAGAAGTAAAAATCATGTTTAGGAGGTAACATAATGGGTTAAACCTTAACATAGGATGTATTTAAATGCTTACGCCATACAATTTTTATAGGCTTGTCCTGTTTGTTAAACCTTAACATGAGATGTATTTTCAAGCAATTGAAAGTTGAGAATTGAGAGTGAATAAAAATTTTACTAAGGAGTCTGCTATTTTTTATAAGTAGCAGATTATTAATTTTCCCAAGTGAATTGCAAAATAAAAGTAGGATAAAGCTAATAATGTTAGTGTTTTACATAGTATTTTCTATAGAAAATTATATTTTACAAAATCACCTGGTAAACTTTTAAACAAACCTTGAGATTCCAATGGCTATATGCTACTATTAATTTTAAGGAATGCTGATTTTGCAGTG # Right flank : CGATTGAAAGTTGAGAACTGAGAGTTGAGAGTGAATAAAATTTTACTAAGGAGTCTGCTATTTTTTATAAATGGCAGATTATTAATTTTTCCCAAGTGAATTGCAAAATAAAAGTAGATTAAAGCTAGTAATGTCAGTGTTTTACATAGTATTTTCTATAGAAAATTACATTTTACAAAATCACTTGGTAAACTTTTAAACAAACCTTGAGATTCCAATGGCTTTGTGCTATTGTTAAATTTAAGGAATGCTGATTTTACAGTGTTAAACCTTAACATAGGATGTATTTAAATCTGGAATAACATGGCATAAAGGTTTTAAAGAGCCATGTTAAACCTTAACATAGGATGTATTTAAATATTTGTTTTAAAACTGAATATATATGCCATAGTATTGTTAAACCTTAACATAGGATGTATTTAAATTTATTAATGTTTTCTAAAATTAGTTTAGGTGGAGTAGTTAAACCTTAACATAGGATGTATTTAAATTCTTATCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 68468-67189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWO010000018.1 Clostridium tetanomorphum strain DJ011 NODE_18_length_86394_cov_45.499079_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 68467 30 100.0 34 .............................. GTAATTACAATGACTTCCAAGACATTTCACAGAA 68403 30 100.0 37 .............................. CGGTTACTGATGTGAACGGCGAAAACAAGGATTTTCT 68336 30 100.0 34 .............................. CATATGCAGAGAGAGCAAAAGCCCTCTCTTTTAT 68272 30 100.0 36 .............................. TTAACTTGTCTTAATTCCCCTTGTGTCCTAACCATA 68206 30 100.0 36 .............................. TTTATAAATTTTTTCTCCTGTTGTCTTCCCATATTA 68140 30 100.0 36 .............................. AAATCTTTCTTACAATTGTTACAATAGACCATAAAA 68074 30 100.0 36 .............................. ATATGAAATGGCAGGATAGAAGAACCACTTTACTAG 68008 30 100.0 38 .............................. CATTAATAGCTTTATAAATATAGACGGTGGTGGGTATA 67940 30 100.0 35 .............................. TAAGGCTCTGGATGAATACATACAAATGAAAGGAG 67875 30 100.0 35 .............................. AAGTTAATCTTTCCTACCCTTTGTAGCCTGTCTAA 67810 30 100.0 34 .............................. TGTGGATAATGATATGCTAAGGAAAGCCACATCA 67746 30 100.0 36 .............................. ATAGGATGATGTTTTGATTCTTGTACGATAAACCTT 67680 30 100.0 36 .............................. TTATATTGTTGTTGCTTGTATTAGAGTTAGCTTGTC 67614 30 100.0 36 .............................. TCCTAAATTGCCTAGAGATAAGTATGTTAAAGATAA 67548 30 100.0 35 .............................. GATGGTGGTATGACTTTTGATGAACTTGAAAAAAA 67483 30 100.0 36 .............................. CGCCATGGCTGTTAATGCTATTATAAAACAATTAGA 67417 30 100.0 36 .............................. CCGTTTAATGTTTCTAGTTTATCTCTTATTTGTACA 67351 30 100.0 36 .............................. AGAAGTAAAAATCATGTTTAGGAGGTAACATAATGG 67285 30 100.0 37 .............................. GCTTACGCCATACAATTTTTATAGGCTTGTCCTGTTT 67218 30 83.3 0 ...............GA.........TC.A | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.2 36 GTTAAACCTTAACATAGGATGTATTTAAAT # Left flank : GAAAGTTGAGAATGGAGAGTTGAGAGTTGAGAGTGAATAAAAATTTTACTAAGGAATTTGGTATTTTTTATAAACAGAGTTCTTGGCTTCAGAAGGAGTTTTTACTCCCACTGAAGCTTTATTAACAGAATTCTTAGGAGTTTTACTCCTTAGAAGTCGTTATCCTTTAGGGGAAATCGTTATCCAGGGATGTAGCCGCTCTTTACTCCCACTTTGAAGAAAAGCAGAGAACCCAAATCTTTGATTTGGTGTGAATCGCTTTCACAGAGTGCGATGGGAGTATTAGATCGGGTAGTCATCGGATAAATGGCAGATTATTAATTTTTCCCAAGTGAATTGCAAAATAAAAGTAGGATAAAGCTAATGATGTCAGTGTTTTACATAGTATTTTCTATAGAAAATTACATTTTACAAAATCACCTGGTAAATTTTTAAACAAACCTTGAGATTTCAATAGTTTTATGCTATTGTTAATTTTAAGGAATGTTGATTCTACAGTG # Right flank : GCAATTGAAAGTTGAGAATTGAGAGTGAATAAAAATTTTACTAAGGAGTCTGCTATTTTTTATAAGTAGCAGATTATTAATTTTCCCAAGTGAATTGCAAAATAAAAGTAGGATAAAGCTAATAATGTTAGTGTTTTACATAGTATTTTCTATAGAAAATTATATTTTACAAAATCACCTGGTAAACTTTTAAACAAACCTTGAGATTCCAATGGCTATATGCTACTATTAATTTTAAGGAATGCTGATTTTGCAGTGGTTGAACCTTAACATGGGATGTATTTAAATTCTTTTTTAAAATCTTCATATCCGACACCTGTGCAAGTTGAACCTTAACATGGGATGTATTTAAATACAAACAATTACAAGGAATTTGGAAGAAATTGAAGTGTTGAACCTTAACATGGGATGTATTTAAATTGCAATGGAAACAATGCAAAGTGGCTCTCACATCGTTGAACCTTAACATGGGATGTATTTAAATGATTCTATTAGAACAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //