Array 1 10077-10354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUX010000112.1 Phocaeicola vulgatus strain DFI.1.145 EECEFBMA_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10077 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 10154 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 10231 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 10308 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CCACTCTTTTAGACCTACATGTTGCGGTTG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 30-536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUX010000227.1 Phocaeicola vulgatus strain DFI.1.145 EECEFBMA_229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 30 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 106 47 100.0 29 ............................................... CTCGAGGTCTATCTTCATTGTGGGATTCG 182 47 100.0 30 ............................................... TAGAATACAGAGATTTAACCAAGTATTTAT 259 47 100.0 30 ............................................... ATAGCAATACTATTGAATTTGACGATGAGG 336 47 100.0 30 ............................................... ATGACAACAGAAACACATAATTGTCTATTA 413 47 100.0 30 ............................................... TAAGAGTTGGAAGTTCGGTCGTTCAGATTT 490 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCACTCTTTTAGACCTACATGTTGCGGTTG # Right flank : AAACAGGGATATAATAATGGTATTCATCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 31-1768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUX010000078.1 Phocaeicola vulgatus strain DFI.1.145 EECEFBMA_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 31 47 100.0 30 ............................................... AAACAGGGATATAATAATGGTATTCATCAC 108 47 100.0 30 ............................................... CTGAGTGATTTTCTCTTCCGGTCGCTTGCT 185 47 100.0 29 ............................................... TACTCGTAGGAGTTGAACGGGGAATCATT 261 47 100.0 30 ............................................... CTTTTTCACAGGTTCATCTTCCACCAGCTT 338 47 100.0 29 ............................................... AGTATGGAGTGGTCCAGATGAACCGATTT 414 47 100.0 30 ............................................... GTGAAGCGGTTACAGTCAGTGCGCTCCTGA 491 47 100.0 30 ............................................... ATGCGGAGAAGAAGGGATATAGCAGTCGTC 568 47 100.0 30 ............................................... ACTTCGTCCGAAAACGTGGTTTGGATGAGT 645 47 100.0 30 ............................................... ACCGTTACAATGGAACATACTGTTTGAATA 722 47 100.0 30 ............................................... GACATCGTGAAGTCAATCACAGGCGAGCCG 799 47 100.0 30 ............................................... CCTGGCTTCTGGTCGTCAACGCTGTACTTC 876 47 100.0 30 ............................................... CCAGCGCTGCAAGTATTCAGTTGCACGGAG 953 47 100.0 29 ............................................... GGATCCAGCCAGAGCGGCAGAACCTTGAA 1029 47 100.0 30 ............................................... ATCCGTCTCAATCATATTCCCTTTGCCAGT 1106 47 100.0 30 ............................................... TGGTTTATGCTAATGACGAGTTCTGTATGA 1183 47 100.0 30 ............................................... AACAAGGACAATAAAGAACTATACAAACTT 1260 47 100.0 30 ............................................... TGACGAATCAAATGTTATGTTTATCTGTAA 1337 47 100.0 30 ............................................... AAATCGAGCAGACGGCCACCACTCCGCAGA 1414 47 100.0 30 ............................................... ACATATACGCACTGAAAACGCAGCTTATCT 1491 47 100.0 30 ............................................... TATCGGCCATTCTCTCCATACTGGATTTGC 1568 47 100.0 30 ............................................... GTACCCGTGAAAGATGAGCGTTTCGGTATT 1645 47 100.0 30 ............................................... TATCCATTAGTGCTGAGGATGCTATACTTA 1722 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : AAACAGGGATATAATAATGGTATTCATCACG # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //