Array 1 1217-33 **** Predicted by CRISPRDetect 2.4 *** >NC_008701.1 Pyrobaculum islandicum DSM 4184, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 1216 25 100.0 44 ......................... TGAGTGTATTATCTCGTCTATCTGTGCCAGACGTCGCGCTTCTT 1147 25 100.0 42 ......................... ATGTCTATCTCATGGCGGAGGGCCCTGAGGAGGGCCGCCACG 1080 25 100.0 41 ......................... CAACATTATCGGGACTGACATCGTGGGCCACGTGGTTAAGG 1014 25 100.0 44 ......................... CTCCACGGTGCCGCCGGCCGCAAACCTGGCGCCCGCCTTAGCAT 945 25 100.0 44 ......................... ACAAACTTCTCGCTCGCGAGGAAGCTACACGGCGTCCGCACGAA 876 25 100.0 44 ......................... GTTGCATCTGGAGCGACAAGCCTTGGTCTGTCCTCTGCAGAGAG 807 25 100.0 44 ......................... GACGAGCTGGTCGCCATGATGGACGCCGAAACCGCCCTGAGGGC 738 25 100.0 40 ......................... TATTGGGGGGCTTAAAGTACTCTCACCACAGACAGTGTGA T [721] 672 25 100.0 44 ......................... AGATCAATGATATGCAACTTTACATATTTGCCGCGGAGTTCTTG 603 25 96.0 43 ................G........ TCTATACAGCCCCATAGCCCAATATTCGCTTGCCCACGGGTAC 535 25 100.0 43 ......................... CTTGATCGCCGTCGCCCGTCTCCGCTCCGCTACCGACCCTAAA 467 25 100.0 44 ......................... CATATGTGCTCTGTTGGATACGGCGCCGGGTTAAACACAATCGT 398 25 100.0 45 ......................... ATAGGTTCTATTGTGCCATTTTCTTCGTTGCTTTACTAACGAGGT 328 25 100.0 41 ......................... CATATTCCCCGGTCAGCAATTCGACAGCGGACTTCCCGCCG 262 25 100.0 41 ......................... CATATTCCCCGGTCAGCAATTCGACAGCGGACTTCCCGCCG 196 25 100.0 44 ......................... CTCAGCTGTGATGCTGGAATCTCACACGGCAACAGAACATGGAA 127 25 100.0 44 ......................... GCCACTCTCATGACGTCAAGGAGGGCGGTCTCGATGTGCGACGG 58 25 92.0 0 .......................TT | A [36] ========== ====== ====== ====== ========================= ============================================= ================== 18 25 99.3 43 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : GGCCTTTTTGAGGGCGTCCACCAGCGCAGCGACGAGTTGCCTAACGGGCAGAGGCCTCGGGACGAGCCTCCTCACCCTCACGGCGACGCCAAGAAGGTCGTCCACAGAGCCGAGATAGACAGTGTCCCGAGGGCGCCAGCCCAGCTTGAGGTACAGCCGCCTGCCCAAAAGCCAGAGGTACCCCACGAGAGGGCCTATCTTCATACGGCCAAAGTAGAGATACATGCCCACGATATCCCACAAGCATTAAAACATTCCAATATATGTCGGTAAAGGACACAATATACTTTAGACAAGGGGCTAGACAGCCAAACGCGAAGAATGGCGCTGGGTCTCCGCCATCTCTAAGGCGCGTGTATGATGGTAAAGGCGAAGAATGGCGTACGCCGTCTCTCAGACAGAGGAATGTATGAATGTAAAGAGGGGTTGGAAAGCGACCGCCGGCCAGACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCCAAAAACACAAGCC # Right flank : TCTGACGTGTGATACGCTTGTCTGTGGGGTGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 38866-39842 **** Predicted by CRISPRDetect 2.4 *** >NC_008701.1 Pyrobaculum islandicum DSM 4184, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 38866 25 96.0 43 ........................G CTCCTGCTCGGATGCAGAAGGGACTCGGACGGGCGTGTCGTCT 38934 25 96.0 43 ........................G TATGCTCCGGGCTAGACGGCCTCCCCGAGCCCGTGCGGGCGAG 39002 25 96.0 43 ........................G TCGCGGTAGCACTGGACGACTGTGTCCCACCCACGCTCCTCAG 39070 25 96.0 38 ........................G CAATCGCGTCCATAACCGCCCGCCAGTCCTCGTCGCAC 39133 25 100.0 43 ......................... GCCGCCATCGCGATAGCGTACTACGCAGGCGTCAAGAGGGGCG 39201 25 100.0 44 ......................... ATAAACAGACGCCGCCCTTCTGGTGGCTCCCCGTCGACCTCTGG 39270 25 100.0 45 ......................... TCTGTAATCAACTCCTCCAGACCATACCTCCTCAGCAATCTGTAG 39340 25 100.0 43 ......................... TACGTCTCGTGGAGCGGGGCGAAGCTAGGCACATACGTCGTCA 39408 25 100.0 38 ......................... CTCCAACAGGTGGGGAGGTGGGAGAGGGACATGAACAA 39471 25 100.0 44 ......................... TTAATATAGAGAACTCCCCTGTCCACAGGGGCGAAACGTTTATT 39540 25 100.0 51 ......................... GCAAACGTAGTGAAGACCGCGGTCATCGGGAATGGCGGTCATGCTTGCGCT 39616 25 100.0 40 ......................... CCTCTTCTAGCTCTCTGTCTAGGTCTTGAAGAAATTCGGC 39681 25 96.0 44 ........................T GCCCACTCCATAGACCATATCAGTTGTCTTTCCGCCATTATCTG 39750 25 100.0 43 ......................... GGGGCGTCTGAGACGTCTATCACGACGGGGACAGACGTAATGT 39818 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =================================================== ================== 15 25 98.7 43 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : AGGCCTTCCTGAGGGCGTCCACCAGCGCAGCCACGAGGTGCCTTACGGGCAGGGGCCTCGGGACGAGCCTCCTAACCCTCACGGCGACGCCAAGAAGATCGTCCACACTGCCGAGGTATACCGTATCACGCGGACGCCACCCCAACTTCAGATAAAGCCGACGGCCCAAAAGCCACAGGTACCCAACGAGAGGGCCTATCTTCATACGGCCAAAGTAGAGATACACACCAGCCACAAAACCCACACATTAAAACATTCCCATATATGTCGGTAAAGGACACAATAGACATTTGGAAAACGGTTGTGAGGGTAGAGGCGAAGAACGGCGCTGGGTTCTCCCTTCGGCTAGGCGTAGTTACGATCGTAAAGGCGAAGAACGGCGCACGCCGTCTCTCAGACAGGAGAATATATGAATGTAAAGGGCGGTGGAAAAGCGACCCCCGGACAAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCCACACAAACAAGCC # Right flank : CATGTATATGCATAGGAGGTGCGCTTCAAGGAGTTTTTCCCTAAACGCCCAGAAATCTAAAGTGTGGGCTTGTTGGTGTGGTGGGGGTTGTCGGGTTGATGTTTTTATGTGCCAGTGGTTTTTCTGGTATGGATTCTCGGTTAGTGGATGTGTTGATGGAGGTTCAGTATGACTTTCCTCTGGTGGAGCGGCCTTTTGCTGTGGTGGGTGAGAGGGTTGGGCTTGGGGAGGGGGAGGTGGTTGAGGTTCTGCGGGGGGCTGTGAGGGCTGGGGTGCTTAAGAGGATTGGGGCGATTTTGAACTACAGGGCGAGGGGGATGGAGGCGGCTTTGGTGGGGATGGCTGTGCCGGAGGACGTCATCGAGGTGGTGGCGGCGGAGGTGAATAGGGACCCGTACGTGAGCCACAACTTCCAGCGGGATTTCAAGCCGTACAACCTGTGGTTTGTGACTAAGGCGCGTAGTAGGGAGGAGCTGGAGGGGAAGGTGGCGGCTGTGGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 1404032-1404192 **** Predicted by CRISPRDetect 2.4 *** >NC_008701.1 Pyrobaculum islandicum DSM 4184, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 1404032 25 100.0 42 ......................... CAGAACACGTCTGGGAATATCATGATGTCCTCCAGTTCCCAA 1404099 25 100.0 44 ......................... TCAAAAAAGACGTGCTTGTCAGAGTACCCAACTATCCCCCTCCT 1404168 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================ ================== 3 25 100.0 44 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : AGGCCTTCCTGAGGGCGTCCACCAACGCAGCCACGAGTTGCCTAACGGGGAGGGGCCTCGGGACGAGCCGCCTAACCCTCACGGCGACGCCAAGAAGATCGTCCACAGAGCCGAGGTAGACAGTGTCCCGAGGGCGCCAACTACGCTTCAGATAAAGCCGCCTGCCCAAAAGCCACAGGTACCCCACGAGAGGCCCAACCCTCACACGGCCGAAGTAGAGATACACACCAGCCACGAAACCACCCCATTAAAACATTCCCATATATGTCAGTAAAGGATGTAATATACTTTAGACAAGGGGCTAGACAGCCAAACGCGAAGAATGGCGCTGGGTTACGCAGTCTCTAAGGCGTGTGTATGATGGTAAAGGCGAAGAATGGCGCACGCCGGAACCCAGACAGGAGAATGTGTGAATGTAAAGGGGCGTTTGAAAGCGACCCCCGAGGGAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCCATAGACACAAGCC # Right flank : CATCATGTGCATAATCCACCTTAAGTTTGTCTTTGTTGTCAGAATAGTAGAACTGTGCGGTGGCAGTTTCTCAATTGGTGGTGGTTTAGCGCGGGGTGGTGTGTGGTTGTGCGTTGGGGGTGTTGGGCGTTTTTGTGTTGTGGGGTTGGGTGTATTGTTTTTATATGTGTTTCTTTGTTTGTATATGCGGGTTTGGTTTAGGGGGGTGCATAGGCTGCTGGATTCTTCGCTTCATTTTCGGGATCTGAGGGGGAGGAACGTCTTGCTTAATGTGGCTAGGTGGCTTGTGGCCGCGGCTTGTGGCGGCCGGGCCCACGTTCATGTTGACTGTGGGCGGGAGCCGCCGGGGGAGCTCCTCAGGGCTGTGTCGTACCTCATATATCCCGCGAGGCTGGAGCCGGGCGTGCCGTTTGACGGCTCGCCGGCGGAGGGTGGCGTATGTTCTCTCTGCGGCAGGGGGCCGGCGGCTGTGTTGACTGGAGGCCTGAGCTGTTTTCCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 1414028-1413730 **** Predicted by CRISPRDetect 2.4 *** >NC_008701.1 Pyrobaculum islandicum DSM 4184, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 1414027 25 100.0 45 ......................... AGCAAGGCTGGGAGTTGGCCGGACTGAACCGCGTTGAAGACCGCG 1413957 25 96.0 43 T........................ GACGTCATAAAGGCCATCTGTTCGAGAGAGACGATTACGCCCT 1413889 25 100.0 43 ......................... CTCGCCTTCCAGGCCTGGAGGAGGGCGAAGCCGGCCATCGCGG 1413821 25 100.0 43 ......................... CGGATCTGTCATATGGCCCAAGCAAGCGGAGGGGGTTTGCCAC 1413753 24 84.0 0 T..........GC-........... | ========== ====== ====== ====== ========================= ============================================= ================== 5 25 96.0 44 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : GTATCCTCACCACGTGCAAAGCCGCCGCGCCACCCATAGATTGGGCTGAGGTGCTCTCTAAATCGCTGAGGCCGGCTCGATAATGCACGAGCGCAAGCCCCTTTTAAAATAAAAGTAGTAGTAATGGCAGTGGTGCCTTCACGAATATGTAATCGCTTCTCTCATCAACGCTTACGCATAAGTTATCTGGATCGAGATTAAGCACGAAGTAGAAAGTAGAGATACACACCAGCCACGAAACCACCCCATTAAAACATTCCAATATATGTCGGTAAAGGACACAATATACTTTAGACAATGGTTTAGAAGGCCGAAGGCGAAGAACGGCGCTTTACCACGCCCTCTCTGAGGCGGGGTTGCGATCGTAAGGCGAAGAACGGCGCACGCCGGAACCCAGACAGAGGAATGTATGAATGTAAAGGGGCGTTTGAAAGCGACCGCCGGACTAACAAAAAACCATGAAAAAACTTAAAAACCCAAAAGATCCGAAAATACGAGCC # Right flank : ATGATCATATCCAACTCGGCTTGGGGGTTTTAGGGTTTTTTGAGTAGGCCTTCGCGTTCTAGCTTTTTCAGTGCTAGGTATATGGCGCCTGTCCCGGAGAGCTTTGGTATGTAGTAGCAGTGGTCTTGGCCTCCCCTCTCTTCTAGGGCCTTCCTGAGCGATAGGTAGCTTATGTATGGGTTGTCTCTGCTGACTAAGGCGCGCCTCACCGCCTTGCCGTCGCCGAAGGCCCTGTATATGTCTAGGGCGAACTTCACCTGTCTGTAGAAGTTGGGGGTGTACGCCACCAGGTACTCGTCGGCTGGGATCGCGCCGAACAGATACGGGGAGAACGTCTCGGTGGCCACCAGCACCAGGCAGCCGTCGAGCTTAACCCCCTTCTTCTTGAGGTCTTCACAGCTGTCGACGTCGGGGGAGCGGCTTAGGCTCCTGCACGCCTCGTCGTACGCCCCGAAGAACCACCTACACGTGTTTCCGGCGCCCCCCTCTTGAAGCCAGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 5 1759457-1756968 **** Predicted by CRISPRDetect 2.4 *** >NC_008701.1 Pyrobaculum islandicum DSM 4184, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 1759456 25 100.0 42 ......................... TCCCCACATGTACGACTTCTTCGGCTACGTGGACTACGCGCG 1759389 25 100.0 44 ......................... CAGCTCCAACATCGGCTTGGGGTAAGACGGCGTAGAAGATCGGC 1759320 25 100.0 44 ......................... GGGCCCTGGCCTGCGTCGGTGCCTGGGCCCTGTCCCAGTCCTGA 1759251 25 100.0 40 ......................... GATTACCCAATGGCCCCCGTTCAGTTGAACTTTATGCCAG 1759186 25 100.0 47 ......................... CTACTGAAAAACAAACCCGAGGAGGTGGCATGAGCGTAGAGTTTAGA 1759114 25 100.0 44 ......................... TTGCATAATGTACAGCCCCGGCAACAGCGTGCGCGCCAGATGTA 1759045 25 100.0 45 ......................... AGGACTAAGTTGGGCTTAAATGAGGCCTCTGAGCCAGTTGACTAC 1758975 25 100.0 43 ......................... ATCTCTACAGGGCATGTTCACCTAGCTTCGACACGTTCCACGA 1758907 25 100.0 44 ......................... TTCTTACAGGGCACGTGGGCAAGCGGCTGGGTCACAGCTGTCAC 1758838 25 100.0 40 ......................... AGCACTTTCCCGACTACGGGGGCCACTTCTGTTGCCAGGC 1758773 25 100.0 41 ......................... CGTAACATCATTGCTAAATCCTCGGTGTAATAATCACGTGG 1758707 25 100.0 38 ......................... GTTATCGAGTTACGCTCGTCTGGCTCGACTATGTCCGC 1758644 25 100.0 39 ......................... AGAGGCTTGCCAAAGGTGATATTTGAAGCAGTGGCAAAG 1758580 25 100.0 44 ......................... CTTAATCACGGCGAGACACGCGGCGTAGTCTCGAGGTACTGCAT 1758511 25 100.0 42 ......................... GAGCCGAGGTACGCCGTGGGACAGCCGATAAGGATAGTTGGT 1758444 25 100.0 46 ......................... CACACTCTTAATGAGTTTACGCGCTTCAACTAGTAGGAATATAGCT 1758373 25 100.0 43 ......................... AAGATACCGCGCTACTTTTACAGCATCCTCCTTTCGGATAACG 1758305 25 100.0 42 ......................... AATGTTATCTCCGCGATTACTCAGTCGTCAGCTCAGTGATTG 1758238 25 100.0 41 ......................... AGGCCCTCGTACTCATTTCTAGACAGCGGGAAGGTCAACAG 1758172 25 100.0 45 ......................... CTAGTCACCGCCATCGCGAGGTACCACGCCCTGCGGGAGATGAGG 1758102 25 100.0 45 ......................... GTGGGGGCCTTGGCGGAGTTGGCCGCTGTGCCGCTCCCCAAGACC 1758032 25 100.0 44 ......................... CTCAAGGGCGAAACGTTTATTAACCCCTGGTTTTCACTACTGCC 1757963 25 100.0 42 ......................... CATAAGCTCTTTGGCCATCCTCCCCTTCACTACCAATTTTTC 1757896 25 100.0 45 ......................... CTAGACCACCTAGGCGCTTTCGCAATAATCACGCCTGTAAGTGGC 1757826 25 100.0 44 ......................... TGTATGCCCCTAACCGCCACCGTCGCTGTGGCGGATGTCGTCGA 1757757 25 100.0 45 ......................... ATATCCATCAGACGTGAAGAGGACGACGACTGTCCCCCCATGGCA 1757687 25 100.0 44 ......................... CTTCGGCAACATGTACCGCGACCCGTGGACTTGGGAGCCGCACT 1757618 25 100.0 42 ......................... GCGGTAGTCTGCGTCGACAAAGACTGGGGCACGCCGGGCTGT 1757551 25 100.0 42 ......................... TTGTCTTTCTGCAACCGCTTAACCGCCCACCGCAGGAGGTGC 1757484 25 100.0 41 ......................... CGTATACTCTCCCTCCCTGGCACATGTATATGACGTCCAGG 1757418 25 100.0 47 ......................... GGCCTCTTCGAGTGGTCGCCGGGGGGGGGCAGTCCCCGGCGGCTCTG 1757346 25 100.0 41 ......................... AGCTATGTGGCGGGGCACCACCACGAAGACCCTGTTCAGAC 1757280 25 100.0 44 ......................... AACAGCATCATTGCATCTTCTAGTGCCGCACTTATCTCTACGAT 1757211 25 100.0 45 ......................... CTCAAACGCGTGGCATGAGGACTGCGCTCACGGCCTCCGCCTGGG 1757141 25 100.0 51 ......................... TCAAGCGCATAGACAAGCGCAGGTTGCGGTTTAACCTCAGCCGGCGGGATG 1757065 25 100.0 44 ......................... ATCTGGTACAATATCTTGGTCATAACGCGGCGGAACAGAAAGAA T [1757051] 1756995 25 96.0 0 ...............A......... | A,A,A [1756973,1756976,1756978] ========== ====== ====== ====== ========================= =================================================== ================== 37 25 99.9 43 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : AGGCCTTCCTGAGGGCGTCCACCAGCGCAGCGACGAGTTGCCTAACGGGGAGGGGCCTCGGGACGAGACGCCTAACCCTCACGGCGACGCCAAGAAGATCGTCCACAGAGCCGAGGTAGACAGTGTCGCGAGGGCGCCAGCCCAGCTTGAGGTACAGCCGCCTGCCCAAAAGCCACAAGTAGCCAACGAGAGGGCCTATCTTCACACGGCCAAAGTAGAGATACACACCAGCCACAAAACCCACACATTAAAACATTCCCATATATGTCGGTAAAGGACGCAATATACTTCAGACAAGAGGCTTGACAGTCAAACGCGAAGAACGGCGCTGGGTCACGCCGTCTCTGAGGCGTTGTCACGATCGTAAAGGCGAAGAATGGCGCACGCCGTCTCTCAGACAGGAGAATGTATGAATGTAAAGGGCGGTGGAAAAGCGACCGCCGAGGGAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCCGAAAATACAAGCC # Right flank : AACTACACGATGATTCACATGTGCTTGACTTACGGTGAGCCGACGAAATTTGTGACTTTTAGAAATTGGCATGTGTAGCTATATGACTTTATCTTGATTATCAAGTTTGTACTGTGTTTCATTGTCTACTAATGCTTGGTTTTCTATTACTTCAGCTTTATGTTTTTTCATAGCCCTTTCTCAAGCCGGCGTTCGGTTTCCCACCCACCTTTACGTTTATACACTGCTCTTCTGCGCTCCTTACATGGTGGATCCCCCCGTGTGTCGGGGCGTGGACGGCCTTTGATGGCGTTGGCCGGTGGTCTGGGCGGCTCTCGCCTGGCCGCACCTTTCTGTGTGGGGGTGTTCGGCGCGGTGGTTCGGCGGCTTCTGGGGGGTGTTTTGGGGGTCTATGTTAATATATGGGTGGTTGTTGGTTTGTGTGGTGGTGGGGGTGTTGAGGGGGTTTGTGTCGTTGTTGTTGGTGTCTGGTAAGAATGTGTTGTTTGTGGGTGCTCCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //