Array 1 31588-32082 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEZ01000019.1 Staphylococcus warneri strain SNUC 2135 contig019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 31588 33 100.0 33 ................................. AACTTCACATTGTTTTAAACGGACATCGTTATT 31654 33 100.0 33 ................................. AACTAAAGTAATGTGACTGCTCTTTTTTACTAA 31720 33 100.0 33 ................................. AACCAGATAATTATTCTAATGCGGCTGTTATTG 31786 33 100.0 33 ................................. AACTTAACTTCTAGTATATTCAATCCAGTATCT 31852 33 100.0 33 ................................. AACGCAGGTGGTTATGCATATGTGTTACGACCT 31918 33 100.0 33 ................................. AACTCACTCCTTTCTGCAATAATGGGTGGGGTT 31984 33 100.0 33 ................................. AACGGTGTTTTTAACAAGTCTAATCCCGTATGC 32050 32 78.8 0 ...........T........G.-A.....AA.T | T [32076] ========== ====== ====== ====== ================================= ================================= ================== 8 33 97.3 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : AAGGGTTATATACAGACTTTGTCATCGTTAATCAACAAGGTCATCGTGTTCGACCAAGGCAAGGCTATGTACATCATGTAGCAGTCAATCTTCCTACAGATACAGACTTAAATGACATTTATGAAAAAATAGCACGACAACCCAACCCTAACTCCGGCATTATCGATCGATACTTCTTTAAATCATTATACTATCGACATAACCAAATACTATTTGAATTTGCGACAGCAGAGCCAGGATTTACCGTTGATACACCCGTCGATAAACTAGGTCAACAACTCAACCTCCCCGATTTTCTAGAGGACAAAAGAGACGAGATTGAAAGCCAATTGAGAGAAATATAGAGGACAATGTTAAAGCACTCGCTATTACGGCGCGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAAAATGGATTACTAAAATTTTTAGTAGTAGAGTTTTATATGCTAGAG # Right flank : TATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTGTGTTTTAGTACAACTTCTGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAGATTATAGATGCAGGCGTTAGGCTTTTTCCAGAAGCAAACATAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGGAGAAGAATACATAGATTAGATCGAGTGAAATCATTACTCACAGAATATAACTTAATAAATAGAGAACAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 3096-3656 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEZ01000075.1 Staphylococcus warneri strain SNUC 2135 contig075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 3096 33 100.0 33 ................................. AACATACGTAATTGTTCGCCCATCATCTAATCG 3162 33 100.0 32 ................................. AACGACGTCGAATTGTTCTGTGTACGCTGCGA 3227 33 100.0 33 ................................. AACATGATTACTATTATACAATTGATTATCTAT 3293 33 100.0 33 ................................. AACAACTTCGGTAGTAAATCATGCAAAAGGTTT 3359 33 100.0 32 ................................. AACTATCTTGAGTTAACACAAAATAACTTGAT 3424 33 93.9 33 AG............................... AACGAATTGGCTCCAAATTCTTTGTAAGAGCAT 3490 33 100.0 33 ................................. AACTAACATCTCATTCTGTTCCAGGTACTTATA 3556 33 100.0 33 ................................. AAACGTTACTGAACGTGGAATCGACTTCGAGGA 3622 33 100.0 0 ................................. | A,A [3650,3654] ========== ====== ====== ====== ================================= ================================= ================== 9 33 99.3 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTAAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAAGATAAAATCGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACCGTCTATATTATAAATGATAAAAATAAGTCTGATCATTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACAATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAATATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGTAAACTTTTTCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //