Array 1 441377-438002 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDF01000002.1 Bifidobacterium pseudocatenulatum strain OF01-12 OF01-12.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 441376 36 100.0 34 .................................... AACCAGTTGACGTCCACCGCGCCGCTGATGCCGC 441306 36 100.0 37 .................................... ATCAGAGACGATGCGCGTCTTGCACCCTGCTGCGCAA 441233 36 100.0 38 .................................... TGGTTCGCGAGGCTTCCGACAAAGGAATCACCTTGCAC 441159 36 100.0 35 .................................... TATCGTTCGCAGGCGCATTACGACACGTATGGCCG 441088 36 100.0 36 .................................... TTGATGGTGGTGCCACTCATGGTGCCGGACGCGAAA 441016 36 100.0 39 .................................... CGAAATACCGCTGGAAGCAAGGTCAGTCAGCGGACTGAT 440941 36 100.0 37 .................................... TTTGCCATAGTACAGTCGGTAAACTCGATACCATCCA 440868 36 100.0 37 .................................... TTGCAAGCGCCGTCCGAAACTCCACTGCGCAATACCG 440795 36 100.0 39 .................................... AGGCTTGACATTGGCGCTCAGCAAGCGAATCAGCAACAA 440720 36 100.0 36 .................................... AAAAAAGGCGAAACCGTGACCGTCGAAGACTTCGAC 440648 36 100.0 35 .................................... TGATTGATCCGTAAGCTTTGCCGCATTTCTGGCAG 440577 36 100.0 35 .................................... GGCGACCAGTCGCACGACCATTCAGAGGCCGTCCG 440506 36 100.0 37 .................................... GTGGAATGCGCTCACTGCGGCGAGGTTGTCGGCACAT 440433 36 100.0 36 .................................... TAGACGGAACAGCCGTCCGTCTCCTGTTCGAAGATT 440361 36 100.0 37 .................................... CGGAAAAGTGTGGGCAAAATGTGGGCACGGCTCACCA 440288 36 100.0 36 .................................... TATGACAAATTCCCACAACTCGAATCGGACACCAAA 440216 36 100.0 37 .................................... CCCAACGCCGTGCATCTCGTGTCCGACTGGACCGAAG 440143 36 100.0 36 .................................... TTGGGTGACGACGTGTATGGCCGTTATTCGCTGCCG 440071 36 100.0 38 .................................... TCAATGACACGCTCAGCTCACAAAAAATGAGAGAAGGC 439997 36 100.0 36 .................................... GCGCGTGTATTCGGGCATCTCGTGGTAAAGGCGGCG 439925 36 100.0 36 .................................... ATCGACCCAGCTCACCCCGAGATCGACCAGACCGTT 439853 36 100.0 36 .................................... GTTTCCTCCGTGGAGTATTTGCATCCGCCGCTGACT 439781 36 100.0 36 .................................... GGGCTTGATGTCCTGCCATCCGTGAGCGCACCATAC 439709 36 100.0 39 .................................... TTCCGTGGCGAACGCTGGCAATGGGACGCATACGCGACG 439634 36 100.0 36 .................................... TCCATAGGCCTCATCTACGGCGGCCAGGCGAAGACA 439562 36 100.0 36 .................................... ATTCCCGGATACAATGCGGCAGGCGCGGACACTACG 439490 36 100.0 37 .................................... AGCAATCCGGTTCGCCCACAGCCTCTGGAAGGCTGAG 439417 36 100.0 36 .................................... CATCTTGTATTCGCGGCGTGACATGAATAGCCCGAA 439345 36 100.0 38 .................................... GCGCCGACGAGAGACAGCTACCTGCCGACCACGTTGAG 439271 36 97.2 37 ...............................A.... CTCGCAGACCTGCTGACCGGACGCCGCATCATCCCAC 439198 36 100.0 34 .................................... TGAACGCGGTGCTTTTCCGACTATTAGAGGGGGG 439128 36 100.0 37 .................................... CTAGATCTGCCCGAAGGACTGGATACGGGCAAATGCA 439055 36 100.0 36 .................................... CCGGAACAGCCGCAGCTCGACCCGACGCTGACCGAC 438983 36 100.0 38 .................................... GGCATCGATTTGACCATGTTTGACGTTTCTGGAGGTGT 438909 36 100.0 39 .................................... GCCGCGCTGATCGTACTCGCGTAAAATGTTGAGCAGTTG 438834 36 100.0 38 .................................... GACCAACGTGTGGCCGAGATCACCGGCACGACGGGCGA 438760 36 100.0 38 .................................... GGTCAGCCATCGGTCACCCCTGAAAATGTTTCGCGCGG 438686 36 100.0 35 .................................... CGGGACACTTTGACCGTGCTCGGGTATGTGCAGGA 438615 36 97.2 35 ........................A........... AATGCAATGAGCTGGGTTACCCCATGGCGAGACTC 438544 36 100.0 34 .................................... GAAGAGCATGGAGGGTTTAATCGTTCATGTTGAT 438474 36 100.0 35 .................................... ACACTGCGTTGCGGCATGGCTTGCTCCTTGTTCCA 438403 36 100.0 35 .................................... TTGGACTGGGCAAGTTGGTCCTCAATCTGTTTACG 438332 36 100.0 37 .................................... GAGGTAGCCAGAACGGCGACGGCGTGTTCGCCAACGC 438259 36 97.2 41 ..............T..................... AAGGACCGCACCTTCTTGTACCGCCTCGACTCGTCCGTGAT 438182 36 100.0 37 .................................... ATATCAGCATAAGGACACTCGCCACATGTCCAAGAAT 438109 36 100.0 36 .................................... GCGGAAATCACCGACCGAATCCACCAACTACAGGAA 438037 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ========================================= ================== 47 36 99.7 37 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGCGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCGAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTAAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAACCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCGTCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCGCGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATTGCGTTGGGTGTCGCGAGTATTGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //