Array 1 681822-681313 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP011859.1 Riemerella anatipestifer strain HXb2 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
    681821	    47	 100.0	    30	...............................................	ATTATGTTGATGATATTTACGCAGTTAATA	
    681744	    47	 100.0	    30	...............................................	TAGCTCGTAATTATAGGGCTGTACCCGTTG	
    681667	    47	 100.0	    30	...............................................	AGCTACGGCTACACGCAAATAACACCTAGC	
    681590	    47	 100.0	    30	...............................................	AAAGGTACAGTTGTCGAAAAATTATTTGGT	
    681513	    47	 100.0	    30	...............................................	CTGAAATAGCGTTGCTAAACAAAAATGTAA	
    681436	    47	 100.0	    30	...............................................	CGGCTCACTCGTTTGATTATATAGGTAAGA	
    681359	    47	  93.6	     0	........................G..................T..T	|                             	
==========	======	======	======	===============================================	==============================	==================
         7	    47	  99.1	    30	GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC	                              	       

# Left flank :   CTGTTTATAAATGTTATACCGGAGAAAAAAGACAAATAGTTGTACCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGCTATATGATTTACCAACAGAAACTAAAGCGATGCGGAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAGGACGATGGCTTTAGCCTTTTCCAATTTTCCATTTATATAAGGCATTGTCCAAGTCGTGAAAATGCAGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCACGGTAAGGTGGCTATCATGAGTATTACAGATAAACAGTTTGGAGATATAGAAATTTTCTTTGCGAGAGCTAAAGAAGAACCCAAACCAACCTATCAGCAATTAGAACTTTTTTAGAAACAGAAAAAAGGATTTACTAAAGTAAAAAAAGACAAGAAATAGTGAAAAATCTAATCCTAATAAAAAACAAAACCCATTGAAAAACAACGGGTTTATTTTTTGAG
# Right flank :  ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGTATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAATCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTGGTTACAGTAGTGTTACCTACATATTCAAAAAAGATATAACCTTTTCCTGTAGTAGGAATTGTAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTCCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-6.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [4.87,4.91   Confidence: LOW] 

# Array family : II-C [Matched known repeat from this family],   
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