Array 1 63196-64167 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOGP01000054.1 Mannheimia haemolytica serotype 6 str. H23 Cont54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 63196 32 100.0 36 ................................ CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 63264 32 100.0 34 ................................ TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG 63330 32 100.0 35 ................................ CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA 63397 32 100.0 36 ................................ CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 63465 32 100.0 35 ................................ GTGGCACAGTAACACGAGCAGATGCTGATAAACGC 63532 32 96.9 35 ...............................A CCAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG 63599 32 100.0 36 ................................ TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 63667 32 100.0 34 ................................ TGCGATTTTTGGATTTTTCGGGCGATAAATGATA 63733 32 96.9 34 .....................T.......... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 63799 32 93.8 35 G....................T.......... TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA 63866 32 93.8 35 G....................T.......... CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 63933 32 93.8 37 G....................T.......... AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 64002 32 93.8 35 G....................T.......... TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT 64069 32 93.8 35 G....................T.......... CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 64136 32 87.5 0 G.........T..........T.T........ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 96.7 35 CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Alternate repeat : CAGCCACCTACGCGTGGCTGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //