Array 1 12266-12413 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABP01000051.1 Pectobacterium parmentieri strain NY1584A NODE_51_length_22220_cov_15.0281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12266 28 100.0 32 ............................ CTGTGGGGATGATAAAGAACGACTGGCACCGC 12326 28 100.0 32 ............................ TGGGCGTTTTCGCCAGATACTTTACTGAGGAA 12386 28 78.6 0 ....................TGA.CT.T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCTAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : TCAGGTTTAAATTTCTTTCCTTCCTTGATATTTCTAAGCTGCCTGTACGGCAGTGAACTGTAGCCCGATCACTCTAACGATTTGTTTTATTAGCAGCAATCACCGTTTTTGCCGCAAAAACCCTTTTTTTCAGCCTAACTGTAACTCATTGATTTTTAATCCTGTGAAATAGACCAAATAAAAAGGGTCTGCATCTGGGTAATATTTTTTGTAGCCATCATTTTCCCAAGATATCTGTGATAGGCTGATTTTCGTTAGTTTTCTGAAGATTATATTTTATTTATTAAATAGTTAGTCTGCGATTAATTTCGCTGGCATCAACACCTATTATCGATCGCGGCAGAAAATACATTATGGATAACGCTTTTAGCCCTTCGGACTTAAAAACAATTCTGCATTCCAAACGTGCCAATGTTTATTATCTTCAGCATTGTCGCATTCTCGTCAACGGTGGCCGTGTCGAATATGTCACGGAAGAGGGAAGTCAGTCGCTGTACTGG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5304-5510 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABP01000003.1 Pectobacterium parmentieri strain NY1584A NODE_3_length_204023_cov_14.5839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5304 28 85.7 32 C.AAG....................... GAAATACGGGGCGAGGAATTTAGCTGTTATAT 5364 28 100.0 31 ............................ GCGCCGAACGGGAAGAGCTTGAAAAGCGTGT 5423 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 5483 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================ ================== 4 28 90.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGACTTTTAACAGATAATCGGCATCACCCGTGGTTTTATAGGCATCGATAATCGCATCCACTTCCCCTAGCATCTGGTGAAAGCGTTCAACGTATTCGCTGGTGTGGTTGATCAGCCGCACCTCAATTAACCCCAGACATTCCAGACCAACGGCATTCGGTGACAGTCGGGCATGATAGCCGAGGATCAGTTGTGCCTGTTCCAGCGCGATGCGGCGGCGGGAGCACTGTGAGGCGGAAAGCCCGACCAACTCACTCAGTTCCTGATTGGTCAGGCGGCCATTGGTTTGCAGCAGCGTCAGAATTTTCAGATCGAAATCATCAATGTTGTACATCGCGTTCCCTAAACAGTGTCAGATAGTCAATCTAACAGACTACCAGCTTTTTAAGCCGCGTTGCCTATGAGTTTTTTATCGCTGATTTCCGAAACGTTTTGTTCTTTAAGCTGCCTGCACGGCAGTGAATGCTGGCTCGATGCGCAGCATGACAGCGCGCCCTTT # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCATCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAACTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29323-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABP01000026.1 Pectobacterium parmentieri strain NY1584A NODE_26_length_69813_cov_14.8427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29322 29 100.0 32 ............................. CGTGGTAGCGGTGCTTCTTGGCCATCCAAGAA 29261 29 96.6 32 ............................T CCCGGCTGCACGTGTTTTCCTGGCAAAGCACC 29200 29 100.0 32 ............................. AAATATGTCCTAGCTACTATAAAAATGAATGA 29139 29 96.6 32 ............................A GAGACCTGAAAATAAATGTCATACGTAAAGAC 29078 29 96.6 32 ............................A AGTTCACGGGGCGAGCTGGCTTGCTGTACGCC 29017 29 100.0 32 ............................. GCGAGTAATGGCATTGATTCAGCGGTGTCATT 28956 29 100.0 32 ............................. GCCGGGCTGGAGATTATCGGTAATGCGGAACA 28895 29 100.0 32 ............................. GTCTCGACTACTAATAGGATCAATCATGCGGA 28834 29 100.0 32 ............................. GGCTGCGATGTGGTCGATGAGGCGCTTAACAT 28773 29 100.0 32 ............................. GTGAAAACCTCCGCTACTACCTTTGTTCTCTA 28712 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTTTCCCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTAATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGA # Right flank : TTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33053-31192 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABP01000026.1 Pectobacterium parmentieri strain NY1584A NODE_26_length_69813_cov_14.8427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33052 29 100.0 32 ............................. CTAAGTGAATGTAGAGTCGATACCGAAATACT 32991 29 100.0 32 ............................. CTCTTCGAACGTGTAATGCTCGTCCTCGCATG 32930 29 100.0 32 ............................. ATGATTTTGTTTGAAATCATCAACAACCGATA 32869 29 100.0 32 ............................. GCGGACGTAGATTATCACGGAGTTGTGGTGGA 32808 29 100.0 32 ............................. TTAACTTTCAGATAGTTTCCGTATATCTGCTC 32747 29 100.0 32 ............................. CGCATCATTTTCATCACTGCTACCGCCAATCA 32686 29 100.0 32 ............................. ACTATGTGACTTTGTCGCTAGCCTTTGTCCGT 32625 29 100.0 32 ............................. AAACCGGATTAAACACTATTGAAAATATGTCC 32564 29 100.0 32 ............................. AGTCGTTAGATGTAGTAACAAAAGTGCTAGAA 32503 29 100.0 32 ............................. CCAGATTTGCCGATATTATATGCGAATGTAAT 32442 29 100.0 32 ............................. CAAAGGGTTTCATTTTCATTTACTCCATTACT 32381 29 100.0 32 ............................. GGAGCGTAGCTGACACACCCGCAACAGATTTA 32320 29 100.0 32 ............................. CTGATAGAGAGTATGGACTACAAGTTAAAGCC 32259 29 100.0 32 ............................. TCGCCTACCATATCGTCGCCAGATGAATAGTA 32198 29 100.0 32 ............................. CGTGGCGTTACTCGTCAACGATTGGAATTTGC 32137 29 100.0 32 ............................. TACAATATGAAACACGTGGCACTATTCCTGAA 32076 29 100.0 32 ............................. ATACCGCATATGCTCAATTGCAATCACAAAAC 32015 29 100.0 32 ............................. CCGACAATTGGGCTACAGTTGTTTGCGCCTCC 31954 29 100.0 32 ............................. CGCAGGAACCAGTGCCGGAGACTGGACAGCAA 31893 29 100.0 32 ............................. GACTGAACACCATGACTGATTTATTGAGCAAA 31832 29 100.0 32 ............................. TGCGCCTGAATTGGCTTTAAGCGGTGTTGCGA 31771 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 31710 29 100.0 32 ............................. AATGGTGAAAGACTCCCCCCGCCTGGACATAT 31649 29 100.0 32 ............................. GCTGGAATAGAAACGAATGGCAGTTTTACCGT 31588 29 100.0 32 ............................. ACATCACTGTAGTCGGAGATATTCTCTCATCA 31527 29 100.0 32 ............................. TACATCGTCGGTGGAAATTCGCATAGTTTCAA 31466 29 100.0 32 ............................. GAGTTTCATGCTGCTTCCTCCCGCTGGTATTT 31405 29 100.0 33 ............................. TATTAAATCAGCGGCGGCTACTGCTGTTCGAGG 31343 29 89.7 33 T.TA......................... TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 31281 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 31220 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATACTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAACGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //