Array 1 48170-50543 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQI01000175.1 Serratia marcescens strain 2031 NODE_218_length_117376_cov_18.002625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48170 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 48230 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 48290 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 48350 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 48410 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 48470 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 48530 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 48590 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 48650 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 48710 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 48770 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 48831 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 48891 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 48951 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 49011 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 49071 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 49131 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 49191 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 49251 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 49311 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 49371 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 49432 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 49492 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 49552 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 49612 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 49672 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 49732 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 49792 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 49852 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 49912 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 49972 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 50032 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 50093 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 50153 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 50213 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 50273 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 50333 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 50393 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 50453 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 50513 28 96.4 0 ....................A....... | A,A,G [50533,50536,50539] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 59393-63429 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQI01000175.1 Serratia marcescens strain 2031 NODE_218_length_117376_cov_18.002625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59393 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 59453 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 59513 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 59573 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 59633 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 59693 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 59753 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 59813 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 59873 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 59933 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 59993 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 60053 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 60113 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 60173 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 60233 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 60293 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 60353 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 60413 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 60473 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 60533 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 60593 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 60653 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 60713 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 60773 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 60834 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 60894 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 60954 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 61014 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 61074 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 61134 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 61195 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 61255 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 61315 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [61362] 61362 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [61371] 61423 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 61483 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 61543 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 61603 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 61663 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 61723 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 61783 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 61843 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 61903 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 61963 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 62023 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 62083 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 62143 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 62203 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 62263 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 62323 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 62383 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 62443 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 62503 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 62563 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 62623 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 62683 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 62743 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 62803 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 62863 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 62923 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 62983 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 63043 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 63103 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 63163 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 63223 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 63283 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 63343 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 63403 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //