Array 1 72350-70046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUQ010000004.1 Listeria seeligeri strain FSL L7-1050 NODE_4_length_297416_cov_55.396968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72349 29 100.0 38 ............................. CATAACCTAGAAAGGTACAAATATAATGAAAAATGACC 72282 29 100.0 37 ............................. CCAATATTCGTGCGCGTTATAAAGCCATGGGAGTGGA 72216 29 100.0 35 ............................. ATAGATATCCGCTCCTTTCGTACTACGATTTTGGC 72152 29 100.0 35 ............................. TTCATTTGCTGAAATAACAACATGATAGTTTTTCA 72088 29 100.0 35 ............................. AGAAGAAAATAGACCAAAGAAGACGTGTTGTATAT 72024 29 100.0 37 ............................. AGAAGTATTCAGATACTACAAGCATTGGGTGACAAGA 71958 29 100.0 34 ............................. GATGCTGAAATGATAAAACTAATTTCTGATTTAT 71895 29 100.0 35 ............................. CTTGTTACTTTCAATGACATCGTGAGGCTCGATTT 71831 29 100.0 36 ............................. GTTACCGCTGTTTGTGTATAAAATATTCAGTCGACG 71766 29 100.0 37 ............................. ATGTATTGAACAAATTGAAAGGTTCCAAAGCTCCGAT 71700 29 100.0 36 ............................. AACTTTACGACCACCATATTTCAAAACTTTTTCCAT 71635 29 100.0 36 ............................. AAAATAATTAAAAAACGTTTCAATTTCATCACCTCC 71570 29 100.0 35 ............................. TATATGAACGGAGGTTTTGCTTTACACCCGTCAGC 71506 29 100.0 36 ............................. GCGACAAACAACACGTATAAAAACAAAAAATTAGCG 71441 29 100.0 37 ............................. TTTGGACATGATGCGAAATATGTACTAGAGAGCTATA 71375 29 100.0 37 ............................. CGGAGAAGTTAATTCTTTTGCCAGCCATAGGAGCGCC 71309 29 100.0 35 ............................. TCTTTAGTGCTACGATATTTAACGCGTTGCTTACG 71245 29 100.0 35 ............................. AGGGATTTGATAATACCACCAAGCGCTTTAAAACC 71181 29 100.0 36 ............................. GTTGTTGGGCTTTTTATATTGAAAAGTAATATTTTT 71116 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 71051 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 70986 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 70921 29 100.0 36 ............................. TCGTGATTCCCCTAACGTGTTATCTTAATCGAAAAC 70856 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 70792 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 70727 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 70661 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 70598 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 70532 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 70466 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 70400 29 96.6 35 .......C..................... GACGCAGGATTTGGTAAAGGCGTAGGTACACGCTC 70336 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 70269 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 70205 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 70140 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 70074 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 36 29 98.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCATTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAATCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTCAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 83389-82128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUQ010000004.1 Listeria seeligeri strain FSL L7-1050 NODE_4_length_297416_cov_55.396968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 83388 29 100.0 36 ............................. ATAGAGAAATATTACTCATTACTGGACCGAATATGT 83323 29 100.0 37 ............................. TCGTAACTCGAGCTGAATCAACCAAAATGACTGATAC 83257 29 100.0 36 ............................. AAAGGATACACTGGTCAATTTAAACAAGAAGGTATT 83192 29 100.0 35 ............................. ATAGTTCTTCTTCTTTTCCTCTGTGTTCCTGTTCA 83128 29 100.0 36 ............................. AAGTTTAACACAAGACTCATTTTTAATCGTCTTGAC 83063 29 100.0 37 ............................. CGATTTGATTTGATTTTGAGAAGTCGACACGAACATG 82997 29 100.0 35 ............................. AAAGCCGAGTAGGCTTATTTTTATGCAAAAAAATA 82933 29 100.0 36 ............................. TTCGGTGTCATCATGATGTCGAAACGCAAGGCTTTG 82868 29 100.0 37 ............................. ATGCTTTCCCGGCTTCAACTGTTTTCTTTCCAACCCA 82802 29 100.0 34 ............................. TCCCCTGTTTGTAACTTTAAAAATCCGGGATGAG 82739 29 100.0 37 ............................. TAGGCATCACCCCCTAAATGGGATTTAGCCACCATCT 82673 29 100.0 39 ............................. ATAAAAATAAATAATTTTGCTAATGCGCGCTTGGTTTCA 82605 29 100.0 35 ............................. CTGTGTAGCTTCTTAAGAACAGTAGCCATGTGAGA 82541 29 100.0 36 ............................. TGACTTCTAAAAAAGTATGGACAATGGAACGTGCTT 82476 29 100.0 34 ............................. ACTTTTTAGGTTGCTCAACTAAATAATTAATTAA 82413 29 100.0 34 ............................. AGATTAAGTAGTTCCTGTATATGTTCTTTTGAAT 82350 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 82286 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 82221 29 93.1 35 ........................C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 82157 29 86.2 0 ........C....C..A...........G | T [82130] ========== ====== ====== ====== ============================= ======================================= ================== 20 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGTAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATAGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 90492-89617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUQ010000004.1 Listeria seeligeri strain FSL L7-1050 NODE_4_length_297416_cov_55.396968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 90491 29 100.0 35 ............................. TGGGAAGTTATTTTTTTTAATTCAGTGTGATGTTT 90427 29 100.0 35 ............................. ACTGACTCCACCCCGCTGAGGTATACTCTTGATTT 90363 29 100.0 38 ............................. ATTGGTACAGAAAATGTTCAAGGTGTGTCGATATATTT 90296 29 100.0 37 ............................. ACAAGAAGCGATTAAATTATGAGCTATTGAGGCGGAG 90230 29 100.0 35 ............................. TAGATATATCCATATCTATACTGAGCTATAGGGAC 90166 29 100.0 37 ............................. ACAAATGCCGTTTTTGCTAAAAATCAAATTGATAATC 90100 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 90035 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 89970 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 89906 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 89841 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 89776 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 89711 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 89645 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //