Array 1 12186-10288 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEJ01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2235 NODE_3_length_276951_cov_3.0859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12185 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 12124 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 12063 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 12002 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 11940 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 11879 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 11818 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 11757 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 11696 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 11635 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 11574 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 11513 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 11452 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 11391 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 11330 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 11269 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 11208 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 11147 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 11086 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 11025 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 10967 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 10906 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 10845 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 10784 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 10723 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 10662 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 10601 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 10540 29 100.0 11 ............................. CGGCCAGCCAT Deletion [10501] 10500 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 10439 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 10378 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10317 29 93.1 0 A...........T................ | A [10290] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30084-28468 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEJ01000003.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2235 NODE_3_length_276951_cov_3.0859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30083 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 30021 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 29960 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 29899 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 29838 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 29777 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 29716 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 29655 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 29594 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 29533 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 29472 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 29411 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 29350 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 29289 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 29228 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 29167 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 29106 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 29045 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 28983 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 28922 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 28861 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 28800 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 28739 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 28678 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 28617 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 28556 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 28495 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //