Array 1 1-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHP01000019.1 Streptomyces gancidicus BKS 13-15 Contig0019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 1 33 90.9 28 ......................T......TT.. ACGCGGAGAACGCGCCATCCACGGCCAG 62 33 84.8 28 ......................T.....CCCC. CGCCGGGGGTTTTCCATTCCCCGACTCT 123 33 84.8 28 ......................T......CCAC ACCGTGGCCCGGCTTCCCGGCACCCCGC 184 33 84.8 28 ...........T..........T.......ATC ATTGCCGTACGAATCCAAGACAAAACGT 245 33 87.9 28 ......................T.......CAC GGACCTGGTCGGCGCTGCTGGGTCCCTG 306 33 93.9 28 ......................T.........A CGACGGCGGGGAGGGCTGATGCTCGACT 367 33 93.9 28 ......................T.........T CGACGACGAGGCCGCCGGGCGGGCAGGC 428 33 100.0 28 ................................. CGACGACGAGGCCGCCGGGCGGGCAGGC 489 33 100.0 28 ................................. CGACGACGAGGCCGCCGGGCGGGCAGGC 550 33 90.9 28 .............................TC.T CCGCCTCCCGCCGCTTCGGGAAGCACTT 611 33 90.9 28 ......................T......CA.. CGGCCGCCGAGCTCCGCCGGAAGGGCTA 672 33 90.9 0 ......................T......TC.. | ========== ====== ====== ====== ================================= ============================ ================== 12 33 91.1 28 GTCCTCCCCGCCGACGCGGGGGGGTTCCGGGGG # Left flank : | # Right flank : CGAGTGCCCGCGCGAACAGCTGGCGTGCGTCCTCCCCGCCGACGCG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGGGTTCCGGGGG # Alternate repeat : GTCCTCCCCGCCGACGCGGGGGGGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 39-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHP01000016.1 Streptomyces gancidicus BKS 13-15 Contig0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 39 33 81.8 28 ......C....T....T............CC.T CGACGTGGTCGCCGAGCCAGGCAACGTG 100 33 93.9 28 ...T..C.......................... ACGGGTGGCACGCCCTGCTGTCGTGGAG 161 33 100.0 28 ................................. ACGGGTGGCACGCCCTGCTGTCGTGGAG 222 33 90.9 28 .............................G.GC AGCAGTTCCTCGTCGGCTGGACGGGCTG 283 33 93.9 0 ......C......................C... | A [312] ========== ====== ====== ====== ================================= ============================ ================== 5 33 92.1 28 GTCCTCTCCGCCGACGCGGGGGTGTTCCGTTCG # Left flank : GTTCCGATCGAGGAGTTGGAGCAGCGGCTGCAGAAGGCG # Right flank : CGCCCGGGGTTCGCCGGTTTCGAAGCTGTCCTCCCCGCCGACGCGAGGG # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCCGACGCGGGGGTGTTCCGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87-2825 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHP01000059.1 Streptomyces gancidicus BKS 13-15 Contig0059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================= ================== 87 33 84.8 28 ...T.T.......................GA.A CCGCCCGCACCGTGGCCGTCCTCTCCAC 148 31 87.9 28 .....................--......C.G. TGAGCCGCGTTTTACGGCCGTAAAACCG 207 33 93.9 28 .....T.......................C... GCACCAGGCCGTCGTCGGAGCTGGCGCC 268 32 84.8 25 ...T.............-...........CG.G ACACGTCTTGGGTCGCCGGGGCGTC 325 33 78.8 28 .....T...A....A.....A........A.GG GCACCACGTCCGCGCCGGCCGCACGCAG G,A [327,329] 388 33 84.8 25 ......T...........A...A.G.......A GCCAGCGCAGAAGGTAGACGCCATC AT [415] 448 33 72.7 29 C.......T..T.....A..A.C.C....GA.. AATGTGACACGCTGGCGCAGAATCCCGAG 510 33 81.8 28 .......T.A.T..G................GA CCATGTCCTGGCTGAAGGATGGCCTCAA 571 33 81.8 28 ...A..T.......T..............CG.T TGGCCTTGTCGCCGATCGCGCACAGCGG 632 33 93.9 28 ............A................C... GGCACCCTCGCGGTCCGGGGCTTCTTCG 693 33 87.9 31 .............................AGGA GGGCGGTGTAGGCGAGGCCGGCGGAGGGGTC 757 33 84.8 28 .GGG......T...................G.. GCTGCGTCAGGATGCCCGCCTCGAGGCA 818 33 87.9 28 ..................A..........C.GA CCAGATCCTTCCAGCGGGGGCAGTCCGG 879 33 93.9 28 ..............................T.G GGGGACAGCGCCCCGTATGGGTTCGGGG 940 33 81.8 28 ................T...A........CGGT CCGTCTCGCTGGACTCCGCCTTGACCAG 1001 33 84.8 28 ...T.............C...........GTG. CGGCCTTCAGCGCCATCTGCCCGAAGTG 1062 33 90.9 28 .............................GTT. GGTGGTCGCGCTGGTTCCTCGCGCCCTG 1123 33 81.8 28 ..T.....................C....ATGG AGCTGCAGCCGGAGTCGGACGCGCAGCC 1184 33 84.8 28 ..................A..........GAGG CGCCCGTGGGTAACTCGCCCGCCGTGCA 1245 33 87.9 28 ..................A.....C.....GG. AAGACACCCTCGAGGGCCTGGAGCGCGA 1306 33 90.9 28 .............................GAA. GGCACCAGTCGCCCCTGTCCATGGACGG 1367 33 90.9 57 ...............AT............C... TCGGCCCATGCGGAGTTGCAGCGCCAGGGTCCTCCCCGCCGACATGGGAACGGGCTG 1457 32 87.9 28 ..-..........................C.GA ACCAGTCTCGGCCGACGCGGAGGAACGC 1517 33 93.9 28 .............................CT.. GCGCGCAGGGCCAGGCGCCCGCGCGCAC 1578 33 90.9 28 ........T.........A.............T GCTACCCAGCCGACCAGGACAACGGGCA 1639 33 90.9 28 .............................AA.G CGCTTCGGGATCTTGAGAACCTCTCCGG 1700 33 87.9 24 .G...............A..........AA... GCCGACGGCGCATCACTGCTGGGG CCAG [1728] 1761 33 93.9 28 ..............................G.T CACGGGAGAAGGGACGCCCCATGCTGGG 1822 33 87.9 28 ..........T...................GGG TGGACATCACCAGCGTCTTCGACTCCTC 1883 32 87.9 28 ..........-..................G.GA TGGTCCAGGGCTTGGTGTCGATATGGGT 1943 33 87.9 28 ..T..........................GAG. TCAAGGGCAAGAAGATCGAGATCACCGC 2004 33 84.8 23 ..T..................A.......GT.A CAAAGGTAGGCGCGGGTCCGGGC 2060 33 90.9 28 ..T..........................G..G CATGAACGTCGGCGAGTGGGCGGCAGTC 2121 33 87.9 29 .......................T.....CTT. GGCCGGGGAACATGTCTGTCTGCCCTAGC 2183 33 93.9 28 ..............................G.G CCGCAGGCTTCTTGTCCGGCCCGGCTTC 2244 33 93.9 28 ..............................GG. AGGAGATCCTGGAGGGCCTGGAGCGCGA 2305 33 100.0 28 ................................. GGGCCGGTCCGCCGACCTGCCCGTCGGA 2366 33 90.9 28 .............................CA.G AGTGGAAGCGCAGAACCAGGTCGGTGAG 2427 33 87.9 28 .............................CAGT CCACGGCGCTGGACGAGATCCGGGAGAC 2488 33 87.9 28 .............................CTGA TGGCGCCGGACCAGATGGTGCGGGGCAT 2549 33 93.9 28 .............................G..A AGACACCCCGCGCGCTCCAGCGGCCGTC 2610 33 93.9 28 ............................CC... TCCTCCACGTCAGGGTCCCCACGAAGGA 2671 33 97.0 28 ..............................T.. CGCTCTGGGCCGCCTCGGTCAGTTCGGC 2732 33 75.8 28 .......TT......A......CA.....A.GG AGGCCACCTTCTTCATGAAGGTGGCCTG 2793 33 69.7 0 ..........T...TAT..A.T..C..T.G..T | ========== ====== ====== ====== ================================= ========================================================= ================== 45 33 87.8 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCC # Left flank : GACCGCCGAGTCCTACCAAGCAGCCGTCACCCTCGCATCGCTGCTGATGTGGGCGTGACATTTGACGACAACTCCTAGGCCGCGCAG # Right flank : TCGGAATTCTCATGCACGAGCCGGGGCACGTCCTCGTTCCTGGCAGCCGGCGGCCTGGCCGCTGGCCATTAGGGGGGTCTGGCGGGTTCGTAGGTCACGGTCTGCTCCGGACAGTCGGCAGCCGTCTCGTGCAAGGCCGCTACTTCGGTTTCGACGGCCGCGAGGCTCCAGCGGAGCTTCGTGCCGACCCACCCGGCAACGTACCGACAGTGCACCTCGGCGGCCGGCGGCAGCCTCTCGGCAGGATCCTGGTCGGCCTTGGAGCGGTTCGAGCGGGCAGTGACCGCAACTAGGCTGGCGTCGGCGCCCTGGTCGTTGGCGTACGCCTCACGGCGCTGCGCCGTCCACGCCGACGCCCCGCTGTCCCAGCTCTCCGCGAGGGGCACCATGTGGTCGAGGTCCAGGCCGGAGGCGGATGTCACCCACACCTGGTCGTAGTACGACCACCAACGCCCACCCGACAGCCGGCACCGGGGCCCGACCGTGGGCGGCTCGACGGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:-1.5, 6:0.25, 7:-0.05, 8:1, 9:0.05, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 89-529 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHP01000095.1 Streptomyces gancidicus BKS 13-15 Contig0098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89 29 82.8 32 .CT........G..T....G......... GGCGCCGCCTCGATCAACGCGCCCCGTAAGGA C [94] 151 28 89.7 31 .....-.............G..G...... ACCTCGCTCCCGTGTTCGGATGGCGTCCCAT T [175] 211 29 86.2 28 ...G..............TG.......T. TGGGTCGCCCGTCCGGAGTTGAGCCGGG 268 28 75.9 32 .C.-..TG.T.C.......G......... CTGTTCCTGGCCGACCTGGCACGCCGTAACGG 328 29 93.1 32 ................T..G......... TGCTTGAGCGTGAACGTCATGGTCTCGGTCCG 389 29 100.0 32 ............................. AGGTTGTCGCCCAGTCGGAGGCGGGTGTCCTG 450 29 75.9 21 ...........CG......G..C...GAT CGGGTCGCGGATTCTGCTGCA C [471] Deletion [500] 501 29 86.2 0 ..A..............A.G.G....... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 86.2 30 CTGCTCCCCGCACCCGCGGCGATGGTCCC # Left flank : TCGTCAGATCCCCCCGCCCCATGACCGAACCAACGAGCGACCAGTCAGAAGGTCACATGATCCGCCGGACAGAACCTAAGGGCCTGCGC # Right flank : CCTGCACTCGGACCCTCAGACGGAACTGATGGCCTGCTCCCCGCACTCGCGGGGACCCGCGGGGAGGTCGCGTTTGCCCCGCGGTCCCGCCCCGATGGCCCGGCACAACGGGGCGGGGGTGCGCCGTTCCGGGCCGGGCTCCCGTCGTCGGTGGAGATGCAGGGGGCTCCGCCCCCCACACCCCCGAGCCCTCCACAGAGGGGGTGGAGGCCGGAAATGATCTTGAGGTGAGTGGGTGGGGCCGGGAGTGGGCGGTCGGGGTGCCCCCTCCGCGGCCGGGCACCCTAGGGGACCACAGCCCGCACCGGGCCGCCATGATCCGCTCGCGGAAGATCCGCTCGTTCTCCTCTGGGGACAGCCGGTGCCGCTCCACCTCGGCCGGGCCGATCACGCCAGAACCGCCATGACCTCACGGGCAAGCTCCGCGTAGCGCGCGCGGGCAGCAGCGATCTGCTCGCGGTCCAACGACCGCAGCCCTTCGCGCTCACGGGCCAGCCGGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:-1.5, 6:0.25, 7:-0.11, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGCGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [14-14] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2530-1222 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHP01000095.1 Streptomyces gancidicus BKS 13-15 Contig0098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2529 29 93.1 32 ...C....................T.... CACGCCGCACGCCTGGCCCGGATCGCTGAAGC 2468 29 89.7 32 ...C.............A......T.... TCGTGCACGTTGCCGTCCTCGTCGATGCCGGA 2407 29 93.1 32 ...C....................T.... CTCGAGGTCAAGGGTTGGGTGCGCAAGGACGA 2346 29 93.1 32 ...C....................T.... CCGCCCACGCCGTCGGCCTCGCCCACCCGGCT 2285 29 93.1 32 ...C....................T.... AAATGCCGGCCGATGCTGTCCGTCATGTCGAA 2224 29 93.1 32 ...C....................T.... TCCGTTGCCTTGTGGACCTTGGGCACGTCACA 2163 29 100.0 32 ............................. CCCTTCTCGGTCTCCGGTGTGCCGTGGGAGAA 2102 29 100.0 32 ............................. GAACCATGACGGACCCTCGCACACTGCTCATG 2041 29 100.0 32 ............................. CCGGGAGTGCCTGGACGGGCGGCCGGTCGCTT 1980 29 100.0 30 ............................. ACGGCGTCTGCGGCGCCCAATCCCACCACC 1921 29 96.6 32 ..G.......................... GTCACCGTGACGACCCGCATCGTCCCCACCAG 1860 29 100.0 32 ............................. CTGCCAGACTGCCGCGCTGCCGATGAGCGGCC 1799 29 100.0 32 ............................. CTGCCAGACTGCCGCGCTGCCGATGAGCGGCC 1738 29 100.0 32 ............................. CCGCAGTAGTCGTAGAGCTCGCGGTCGAGGAT 1677 29 96.6 32 ............................A CCGCCCGGCGCCGCACCGGGCGGTTTCCGCGT 1616 29 100.0 32 ............................. GTCTACGACCCGGACCTCATCTTCCCGGGCCA 1555 29 100.0 32 ............................. GTCTACGACCCGGACCTCATCTTCCCGGGCCA 1494 29 100.0 32 ............................. GTCGACAAGGGCACCGAGTTCGACGACTGCCA 1433 29 89.7 32 ...C..........T.........T.... AACCACGCGCCGCGCCGGTTGCCGCGGCCGGT 1372 29 86.2 32 ...C....T..................AA CAGGTGGCCTGGAAGCTCAAGCGCGCCTCGGA 1311 29 86.2 32 ...C..T.......T.........T.... GTCACGGTGCCGTACGCGCTCCCGGCTGGGGA 1250 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 95.8 32 GTCTTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CGTCCAAGACGTCCAGTCCCTGCTCACCCCACCCCACACAGCCGCAACCAACGACGACACCGACGAAGAACACTCCGAACGACGCGACGTACGCATGGTCCACCTCTGGGACCCCAAAACCGGAGCCCTCCCCGCAGGCGTCAACTACGCCACAGGAGAAACCTGATGCCCTCCATGGTCGTCATCGCCACCACCGCCGTCCCCGACCACCTACGCGGCGCCCTCAGCAGATGGACCAGCGAAGTAGTACCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGACGAACTCTGGAAAGCCGTCACCGAAGTCGTAGGAACCGGCGCCGCTCTCCTCGTCCACCCCGCTACCACGGAACAGGGGTACGCCATCCGCACCGCAGGAACCCGCCGCCGGGTCCCGGTGGACTTCGACGGCCTCACCCTGATCCGTATGACCGCCACACAAAAGGTAAAGGAAATGCAAAGTCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : GAGACGGCCGAGAAGCTGGGCCTGACCAACATCGGTAGTTAACCAGCTGGATCCACACAAGTGGTCCAACGAAGACAGCGCTGCGTACGAGGCAGCCAACGGAGCGGTGGGCGCCTACACGCCGTCATCGCCACAGAGGAGGCCAAGGCGGCGCCGGACGAGTCCGTCATCGAGGCCGCCCGGGCGGCGCAGAACCGGCTGGCCCGTGAGCGCGAAGGGCTGCGGTCGTTGGACCGCGAGCAGATCGCTGCTGCCCGCGCGCGCTACGCGGAGCTTGCCCGTGAGGTCATGGCGGTTCTGGCGTGATCGGCCCGGCCGAGGTGGAGCGGCACCGGCTGTCCCCAGAGGAGAACGAGCGGATCTTCCGCGAGCGGATCATGGCGGCCCGGTGCGGGCTGTGGTCCCCTAGGGTGCCCGGCCGCGGAGGGGGCACCCCGACCGCCCACTCCCGGCCCCACCCACTCACCTCAAGATCATTTCCGGCCTCCACCCCCTCTGTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : TCCCCGCCGACGCGGGGGTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 12401-15811 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHP01000095.1 Streptomyces gancidicus BKS 13-15 Contig0098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================== ================== 12401 28 96.4 31 .................A.......... TGGTGCGCGGGTGTACGAGAGGAGGCCCTCC 12460 28 89.3 33 ..................TA.......A AATCGGGCGACAAGGGCGTTTGGGTCGCCCGGG 12521 28 96.4 34 ....T....................... ACGAATCCGTTGTCCTCGCCACAGACCGGCCGGC 12583 27 89.3 33 ...........A.........-.....T ACCCGGCTCGGATACGGGGACGCGCAGGGCAAC 12643 28 100.0 33 ............................ CCGTGTTTCCGGATCCCGTGCTCAGACCCGGTG 12704 28 85.7 33 ......T...........AA..A..... CGCAGGTCGCTCGCGGACAGTTCGGTGGCGAGA 12765 28 85.7 32 ...CT.....................TA CAGCTGGCGCCGTCGCCCTGCTCCACGAGACG 12825 27 85.7 33 .......T.......-TA.......... TCCAGCGACCGGGCGTAGGAACCGCGGAATCCT 12885 28 85.7 34 ..T..........A..C..........C GTCGGCGCAGGCTGGGGCTGTTCTCGAGTTAACA 12947 27 92.9 143 ...............-......C..... ATGTGGCCGACGTCCTTGGGGCCGGTGTCGGGTCCTCTCCGCCAACGGAGGGCTCCGATCGTCGACGATGCGAACGCGGTTTCAGACGTCGTCCTTGCCGACGCGGTGGCCCCGATCGGACAGGATGGTGCCCGTGACGCTGC G [12960] 13118 28 71.4 6 CT...TT..........AA....C.T.. ACTGGG Deletion [13152] 13152 28 67.9 33 ..G.GTG.........T.A.AG..C... CCTCAACAAAGTGTGGCCGATCGCGTGTTTGGG 13213 28 96.4 33 ..................T......... GTGCAGGCGTCCCCGAACCTTCCAATGGACGGG 13274 26 92.9 38 .....................-.-.... ACCGCCCCCGCCGCCGTGCGCATCGTCTCCTTTCCTTG 13338 28 96.4 33 .......................C.... CTGCGCATGTCACTGGTCGAGGCCGCCCGTGAG 13399 28 92.9 33 ..........T....T............ CCCTCGACGTGGTCGCCGAGCCAGGCAACGTGG 13460 28 85.7 32 ..T....T.T.............C.... GCCGGGGCTTCCGCGACCTTGGCGAGCATGTG 13520 28 92.9 33 .........T.......A.......... GACCGGTGGGGCGAGATCCTGTGGCTGCTACGG 13581 28 100.0 33 ............................ GCCCGCGCCATCGCCGCCCGGCTCGGCGTCGAG 13642 28 96.4 33 .................A.......... ATCCCGCCGAGGATCTCGCCGACATTCCCGCCA 13703 28 100.0 33 ............................ CTGCCGCAGCCGACGCAGGAGGCCGCGGTCGCG 13764 28 100.0 33 ............................ GCCGCAGAGTCGACGTTGTAGAGGACCGGAGCG 13825 27 96.4 33 ............-............... GAGCCGCCCTGGTCACCGCGTAACCCGCTGTCG 13885 27 96.4 33 ............-............... ACGTCCGGGTAACGGTCCTCCGTCTGCCCGCTG 13945 28 100.0 33 ............................ TCCGGGGCGGGCGGCTTCTCGAAGGCGTTCGGG 14006 28 92.9 33 .................A.........A CGATCACCGGACGTGCGTTTCAGTCCTGTCCAG 14067 28 100.0 33 ............................ TTCCTGAACCGGCCGATCCAGGGCGAAGACCTG 14128 28 92.9 33 C..C........................ GCGTGCGGCGTGCTCCGCAACGTCAAGGTCAGG 14189 28 92.9 33 ...........A...........C.... CTGCGCATGTCACTGGTCGAGGCCGCCCGTGAG 14250 28 92.9 33 ..........T....T............ TAGGCAGTGCGCAGCACGCAGATGTCGCCGCGG 14311 28 96.4 33 G........................... GGGCACCGGGAGTGGACGGACCGCACGTTCGTG 14372 28 100.0 33 ............................ CAGGACACGGGCGGGTGGAACCAGATGGCCGCG 14433 28 100.0 33 ............................ CAGTCCAGGCATGGCTCGACGTCCACCCCTCCG 14494 28 89.3 61 .............A............GA GGGGGTGTTCGACGCGGAGGGGTCTTCCGATGTGGCCGGCGTCCTTGGGGCCGGTGCCGGG 14571 28 75.0 73 ...............GA...C.CCGT.. TCGACGCGATGCGAACGCGGTTTCCGACATCGTCCTTGCCGACGCGGTGGCCCCGATCAGACAGGACGGTGCC A [14596] 14684 28 71.4 34 CT...TT..........AA....C.T.. ACTAGCAGGATTTTCCCCGCGGTACCGGTCGCCG 14746 28 78.6 33 ..G..T....T..T....T....C.... TTGTGAATCTCGTCGACGAAGAGGTAGTCGATG 14807 28 71.4 33 ..G.GTA.........TAT.....C... TCTCAACAAAGTGTGGTCGATCGCGTGTCTGGG 14868 28 100.0 33 ............................ GCGTCACGCCACGCGACAGTCATGTACGAGGTG 14929 28 100.0 33 ............................ GAGGGGTGAGCGATGGGCCGCGTGTTCGCCACG 14990 28 100.0 33 ............................ GAGGGGTGAGCGATGGGCCGCGTGTTCGCCACG 15051 28 100.0 33 ............................ CTGCCCCGAACGGCCGATGCGCAGTACGGCGCG 15112 28 100.0 33 ............................ GTGGGGGCACCCGTGCCCAGGGTGCCCTCCTTG 15173 28 100.0 33 ............................ CGGGCGTTCGCGAGCGCCTCGCCCTTACCGACG 15234 28 100.0 33 ............................ AACGCTCGTGCCCACCAGCACGACGGGTGGGAG 15295 28 100.0 33 ............................ AACGCTCGTGCCCACCAGCACGACGGGTGGGAG 15356 28 96.4 33 .....................C...... TCGTCCGGGGTGTTGTTCCGGCACCCCTCGGTG 15417 28 92.9 33 ............G..T............ CCCGGAGGGCTGTTCCTCGTCGCCGTGGACGCG 15478 28 92.9 33 ...............G.....G...... GTCCACTGCGACATAGCTCCGGGGGCCCGCCCG T [15493] 15540 28 92.9 33 ...............T.........A.. GACTCCGAGGACCAGGACGACCTCGCGGAGCTG 15601 28 100.0 33 ............................ AGCCGCTCGGGGGCCATGTTGAACATGTGGCGG 15662 28 100.0 33 ............................ CCGGGGAGAGGCTCACGCTCGATGGGTCCGGTG 15723 28 100.0 33 ............................ GCGTCGTTCTTCTTGTCGCCGACGGTGGTGCCG 15784 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================================================================================================================== ================== 54 28 93.0 36 TCCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CTCCAGGCGACGACAACTCCGAGACGAACCCACGACCCTCCCGAGGGATGTGGCCCGCCTCGGACCAGTCTGCACTCTGGAGATGCAATGTCCCGGTTCCTGCACAAGTTCGTCCTGCGTCGCGAAGTACTTCTCAGTACCTCACGCGTAGTGGTCAACGCGGTAATCCGTGCTCTGACCAGCGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGTGACGGACCCCAGGGGTCCGTCACCTCTTACATGCGGACGACCCCCGCCGGCCGAACACATTCTGCGCAACCGGGCCACACCGCAGGACAAGACGCCCGGTCACAAGCGGACAATGCTCACTCCACACGAACGTAGATGACCCCGCCCTCACCGCCGCACCGGACGGCACAAGCCGCCTCGAACGTGCCAAGGGCCTGGACGTGCAGCAAAACCCCAACAGCACACCCCTGTCACCCCTCAACAAGCCGGCCAAATGAACCGCCCCTCCGACGTTCATCGTTATG # Right flank : GGAGATGACTACGTGTTCCGTCTGGACGTCCCCGCCCACCTCGCCTCCTACGCCGGCTACGCTCCGGCCACCCGCAGCTCGGGCTCCTCGATCCCCGGCGAACAAACCCTCCCGCCGCGGAAACGGGCAGCTCAAACGGGCGTTCTTACTCTCCGCGTTTGCCGTCCTGGCCGCCCCGGCCTCCCACACCTACTACGACAATGAAGATCAGCCAGGGCAAGCACCACACCCAAGCCCTCCTCTGCCTCGCCCAGCGCCGGGCCGACGTCCTCTTCGCCATGCTCCGCGACGGCACCTTCCACGAGCCGCAGCCAGCGGCGGTCGCATGACTTACGGGTCGGCCAGCAGCAGCACACGGTCGGCCTCGACGCCGAAGCCGAGAACCGGGTGGAGCGGATCGGACTCCGGGCTCAACAACACCGGCTTGGCGAGCCGACGCCCGATTACCCGCAGTAGACGACACAGCACATTCACTCCGTGCTGCCCCTGCAACTCCCGCA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.29, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [55-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 16815-17579 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOHP01000095.1 Streptomyces gancidicus BKS 13-15 Contig0098, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 16815 33 90.9 28 CG............................G.. CCAGGAACCGGGCAGCGGCGATGGCGAT 16876 33 97.0 28 .................A............... TCACGTTCGGCGGCCAGCCGTTCACGCT 16937 33 87.9 28 .............................GTTC GGCGCGAGGATCCCGTCAGCCTCCCCGG 16998 33 97.0 28 .G............................... CCCAGTACCGCTCGCCGTCCGGATCGTC 17059 33 100.0 28 ................................. GGAGGGCGGACGTGGTCGCCGCGTGCCT 17120 33 100.0 28 ................................. GGAGGGCGGACGTGGTCGCCGCGTGCCT 17181 33 90.9 28 .............................A.TC GCGCCCGGGGTTCGCCGGTTTCGAGGCT 17242 33 90.9 28 .............................GG.A CCTTGAGGGGAACGGTGCGCTGGAACGT 17303 33 93.9 28 ...............................CC ACACGAGGCCGGACGTGACACCGATGCC 17364 33 84.8 28 ........T................A...GTC. GGGTGAGCGTGGCGGTCGCATCCGCAGG 17425 33 78.8 28 ...T..T...............C......TGAA ACGCGCAGGCCCAGTAACGCGTGGGGCG 17486 33 90.9 27 ............A................T..C GGCCAGCTTCTTCTCCGGCCCGGCTTC G [17516] 17547 33 81.8 0 ........T.T..........A.......GTC. | ========== ====== ====== ====== ================================= ============================ ================== 13 33 91.1 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGT # Left flank : AACGTCGAAGTCGATCGAGCCAGACTCATATGGCCGAAAGATCACCAGGAATCCGGGAACCGGCCAGACCCTCAGCACCACGTCGGCGCCCTCACCACGAGCCAGCATCTCCGCAGCCCTCGGCAGCCGGGCCACAGCACCGTCCTCGGAGTACTCGCACGACCACCCCTGCGACCGAACGAGATCAAGCACCGCCTGCCAGTCCTCCACCGAGGTATCCGGGACACGGACGTCCGGCAGCGACCCCATCAACCCGGGAGCAAAGAAGTTCTTGACGTCATCCCATAGCAGGTCAGGCATCACACCATGCTGCCCTGCCACTCACCGAAACACAGCCCGATTCCCTTGACGGAACCCATAGGGGCCCCCACACACACCACCCGAGCCACAACCGGCCGATAGAGTCACAACCAGCGATCCCCTCACCGCCCGCACCTTGCCTCAACAACACACCAAAGCCACACCCGCCAACTGCCACTTACGCACTACCCCGACAACAC # Right flank : TCGGGTACCTGCTGCACTAGGGTCTGTCGTCAAATGATCTTCGATCGGGGATCATGGTCGGGTGATACGTCGCCATGAACTGTCCGATGCCGAGT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //