Array 1 1953-2179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000110.1 Clostridioides difficile strain HC129 NODE_110_length_13158_cov_31.2917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1953 29 100.0 36 ............................. CCTTATACACGACATTATAATATAAGTACGTTTTTA 2018 29 100.0 37 ............................. TGTTTATCTTTTCATTGTTCATGTACATTTCATTGAA 2084 29 100.0 38 ............................. TTTACTGCATTTATACCATCTACACCTTTTATTTTATT 2151 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TACTTATTCTTAAATAAACTAATAATAAGATTAAATATAATAAATCCAGTTGTTGAACCTAAAGCACTAACAGGTACTGATGATATATTAGCGAAATTATTCAATGCTGATAGACATAACATTACTATAGAAACTATAACTAAATAAGATATCACTGTAAAAAATGGAATTGAAATACTTATATTTAACTCTGCTTCATATTCTTTCATAATATCATTCCTTTCAAATTATTTTACTTAACTTTATTATAGCATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAATTGAAAATATCAATTATATGTTGTGATATAATAAAATTATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCCTAACACTTGAAATATAATGTATTGAGGACGTATGATAAGTATTATCAATTGTACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCCAAGTTTATTTTGGG # Right flank : TTAAAAATACTGAAAAACACTTACTTGAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACTTATATAGTATAATAATCTTATAAAATTATTGTGCTAGGGGGATTTGTTATGTTTTGTTCGAATTGTGGTGCAGAAATCACAGGCGTAGGCAAGTTTTGTTCAAGTTGTGGGGTTGCTGTAGAAACTGAAATTATTGAAGATAATAATATTAAATCAAATGACCTAATCGTTGATGCAAATGGAATAGAAATAAATATGACTGAAATTTATAGAAAATATAGAAAAGAAAAAGTAAATGCAATAAAAAATGTAATGGAAATAAGTGGTTTGAATATAAAGGAAGCAAAAAAAATAGTGGATTCTTCCTTTGAAGAGTTAAAAATCAATTTTATTGATGATACTATGAGCAATTCAGAAAAGGAAAAAATAATAAATACTCAAAATAGAAAAAATAATATTGAAAAAGCTCAACAAGAATC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 2745-2254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000223.1 Clostridioides difficile strain HC129 NODE_223_length_3194_cov_16.6893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2744 29 100.0 37 ............................. GTTTTTGTATTTATCTCCCCTTTTTTCTTATCCTCTT 2678 29 100.0 38 ............................. GGGACGTAAGGAAGATCATAAGCAACTCCAAAAAGAGG 2611 29 100.0 36 ............................. TTAGAAAGTAGCCTCATTGTTTTTTCCAACTTTTTA 2546 29 100.0 38 ............................. ATGCAAAATCCCCAAATACTTTTAATAATGGAATTACA 2479 29 100.0 36 ............................. GGAGACAACTAATCTAGGTGGAAATAAAAAGAAAAA 2414 29 100.0 37 ............................. TAACATATTTTTCCAATAGATTTAGTTTTTTATTTAA 2348 29 89.7 37 ......T.........G...T........ ATGTATATCCCAGCAATACTTTTTAGTTTAGACACTA 2282 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 96.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TATTTAGTTTTGAGGGGGATTAATACAATGAGTGAAAATTTACTTAATGAATATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGCGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAAGTATTCTTAGGGAACAACAGGAGAGAGAAAATAAGTAAAATAAATAGATAAAGTACTTGGATATTATGTTGTTTCAAGTGTTTTATATGGTGAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAATACTTGAAATATAAGGCATTGAGAACGTATGATAAGTGTTATCAATTGCACTATTGGTAGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGG # Right flank : TAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAGTTGAAAGTAGGTGATTATAACGTAAAAAGTAATAAACAGGTAAAATATGTAAGTAATATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGATTAGCGTATTAGCTAGTTTAACAGCTAGTCTAATCGGTTACATAGTTTGTATATGTATCAAAAAAGTAAAAAGCCACTCCGGCCAGAGTGACTTTAGTTTTGAACTAAAGATTAAGTTCAAAAAGAAACACTAATTTACGAACTCCACTCTAGTCTTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTGCCTATAATATTTTTATAGTCAATAAAAAGATGAAATTTTTTATACACAATGGTGATAAATCTAGCTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 13433-12477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000102.1 Clostridioides difficile strain HC129 NODE_102_length_14470_cov_26.7263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 13432 29 100.0 36 ............................. TGTAAATGATGATGTTAAAAACATAATAGTTGATGA 13367 29 100.0 37 ............................. TCAACTAAATCTATTGTCGTTCCAGGTGGTACTGCTA 13301 29 100.0 37 ............................. ACACAAATTAAAGAGCTTACCAAAAATGCTATTGTAT 13235 29 100.0 37 ............................. AAAATTATATCGTTAAAAACATTAATAAGCACAATAA 13169 29 100.0 38 ............................. AATTCTATTTAAATAGTTTATATTTTTTATTATATCAA 13102 29 100.0 40 ............................. TGCTCATTAAATCAGATTTATTAAATTCTCTGAATTTTTC 13033 29 100.0 37 ............................. TCGGTTAAATCACGAAGTATTTCGTTTACTGATTCAG 12967 29 100.0 37 ............................. ACAAATATAGTATATCAAAGGAGGAAAATAATGGAAA 12901 29 100.0 37 ............................. CCAACTAACTCTTCATAATCCATACTCGTTAACTTTG 12835 29 100.0 37 ............................. ATAAGAGTGGTTTAAAAAAATAGTTCTTTAAATCAAT 12769 29 100.0 37 ............................. CAGTTAGAACTTTCGGCATCCGTGCGAGGTGTGTCTT 12703 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 12637 29 86.2 37 ......T.........G...T.......G TTGTTGAAGTCGTCGAATTAGAAAGTAGTTCAAAAGT 12571 29 82.8 37 ......T........AG...T.......G ATAGATGCTCCCCAACATAAAATACCTTCAAAGACAG 12505 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ======================================== ================== 15 29 97.0 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : ACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCTAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTTCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3218-494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000077.1 Clostridioides difficile strain HC129 NODE_77_length_18847_cov_9.87089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3217 29 100.0 37 ............................. CAACTAAGCAACTCATCATTATAATGTTTACTAACTA 3151 29 100.0 37 ............................. CTATTTTTTAAATGTATTAAAAGAAAATATCAAAACT 3085 29 100.0 37 ............................. AAATGTCCGAAATGTAATAAATGTAATAAAATTCAAA 3019 29 100.0 35 ............................. ACGGGCAAAGAAGGATTCTCAACATCAGGAACTGT 2955 29 100.0 36 ............................. TATATCAAAACTAGAAAATCAAGAGTACAAAGATAT 2890 29 100.0 38 ............................. TTCAATAAAATTTTAGCATAAATTTGTGATGAATTCTG 2823 29 100.0 35 ............................. ATCTTTAATACAAAGTATAACACTTTATTATTATG 2759 29 100.0 36 ............................. AAGTAAAGATGATATTGGAGATGATGAGTTGAAAAT 2694 29 100.0 36 ............................. CCTTATGACCTACCGAGCGTTGGAACTGTTACAGTT 2629 29 100.0 37 ............................. TTTTTTGTTTTATAACAATATCTTTCTTTGAAATAAG 2563 29 100.0 37 ............................. CTTTTAGCTTTTTTGTTAGTGTTCTTTATTGCTGTTA 2497 29 100.0 38 ............................. CAAAAAGTCTTGAATAATCTTTCAGGTTATATTTTAAA 2430 29 100.0 36 ............................. CAATTGGAACTTTCTGCATCTGTGCGAGGTGTGTCT 2365 29 100.0 37 ............................. TGATACAAATACTTTTTCTTTAACTCCAAGTTCTTTT 2299 29 100.0 37 ............................. AGAGTGAAGTTTCATTAACTAAATATTAATGTCGTTT 2233 29 100.0 37 ............................. TTTATTACATTTTTACTTTCAAAACTTGTAGCCATAT 2167 29 100.0 38 ............................. AAAGAAGTACAAAAGAAGCTTGAAACAATGTATAATGG 2100 29 100.0 37 ............................. TTATTGGCTGAATTTGATGGTTTTATGGATGATACTG 2034 29 100.0 36 ............................. TAAATAGCGGGTCGACTTAATTCTAATATATCAAGA 1969 29 100.0 36 ............................. ATCAATACGATTCTTATCAGAAAGAGTAGAACGAGG 1904 29 100.0 38 ............................. TTCATTAAAATTACTAAAATCTAAACTAACCTTGTTAC 1837 29 100.0 37 ............................. GCAGTTATAAGAGCGATTTTAGAAAATAATGTAATTA 1771 29 100.0 37 ............................. ATGTTTTGAAAAATAACTTATTTTCTTAAACCACTCT 1705 29 100.0 37 ............................. TCTTTTATAGAAAAAGTCATTCATTCTTAGCCTTTTC 1639 29 100.0 37 ............................. TCATCATGGCAACTCGTAGGAATATAAATAGTGTTTG 1573 29 100.0 37 ............................. GAGAAAAATTTTTAGCTCGCTGGTACATGCAAAACTT 1507 29 100.0 37 ............................. TTTTCGGAGTAAATTCTTTTATTATTTCTTTTTCCTT 1441 29 100.0 37 ............................. ACTTTTTGTTTGAAAGAAAAAGGATATTTTGCAAGAG 1375 29 100.0 37 ............................. ATATCAATAGCAGGATTATCAACATTAGGAACTGTAA 1309 29 100.0 37 ............................. TATATTAATAGAAAAGGCGAGTTTAAATATGTGATAA 1243 29 100.0 38 ............................. GGTCTTACATTGGCTATAAGGTCACTTTCTACATTTTT 1176 29 100.0 33 ............................. TTTAGTTATTTTTATATATAACAGTTCTTTCGC 1114 29 96.6 36 ............................G CTTAATTTTTTAAGTTATTTGCAAGATATAAAACTA 1049 29 96.6 38 ............................G ATCTCTGCTCTCTTTTGCAAATTGAGAATCTTTTAATA 982 29 96.6 35 ............................G TCTTTTTTAAGATCGTTTATATTATCCATTGCAGT 918 29 96.6 38 ............................G ATATATACCATCTTTAGTTTTACTTTTCTTTTTACATG 851 29 96.6 39 ............................G ATTGAAAGCAATCAAGTTTATCTTTCTTCTTATATAAAT 783 29 96.6 37 ............................G GAAATTGTTAATGTTGTTACTACTCTTGCTGTTGCTA 717 29 96.6 37 ............................G TTTTGAGTGTATGTTTCTTTTGTTTTATTATTTAAGA 651 29 89.7 36 ......................GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 586 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAATCAGCC 522 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 42 29 98.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : TAAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATCAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6233-6877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000127.1 Clostridioides difficile strain HC129 NODE_127_length_10696_cov_13.9237, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 6233 29 100.0 37 ............................. TTTAAAACCTCATGAGAGGTAAGGGGATGATAAGTGT 6299 29 100.0 37 ............................. TGTATCTACCTCGGTTCACATTTTTTCTTTTAATAGC 6365 29 100.0 37 ............................. TTAGTTCCACTGTAAAAATATATCATTAAAAAACCTC 6431 29 100.0 36 ............................. CCATGCTCCACCATCTGCTTCATATAATCCTGCTGC 6496 29 100.0 37 ............................. TATTTTCATTTTTGAGAGTTACAAAACACTTCAACAA 6562 29 100.0 61 ............................. TATTAACTATGTGGTATGTAAAGATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 6652 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 6719 29 82.8 36 A..............AG...T.......G AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 6784 29 82.8 36 A..............AGA..T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 6849 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ============================================================= ================== 10 29 93.1 40 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAAATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : CTAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 50573-50346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000007.1 Clostridioides difficile strain HC129 NODE_7_length_56408_cov_18.6953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 50572 29 100.0 38 ............................. TTTTTAAGCAAATTTACATCTTTTTAGGTAAATAACAT 50505 29 100.0 37 ............................. TCTGTAAACTGCCTTTTCTCTATTTGTTTCAGTTACT 50439 29 100.0 36 ............................. AGCTTTTTAGCTTCGTCTACTACTTTATAAGCAAAG 50374 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGTATACTAGCGAGTCTATCTGCTAGTTTAATAGTCTATATAACTAGCAAGTTATTTGGAAAACGTAAAAAACCACTCAAAGCTGCAACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCGTAGATTTAAATAATTACAAATTGTTTAAATTATGAACTCCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATGTTTATGATATAATAAAAGTATATTATTTTTGCAGTGAGCGATATTTGTATTAAAATATGCTTTAACCGTTGAAATGTAAGGCATTGAGAATGTGTGATAAGTGTTATCAATTGCACTACTTGTGCTTCACTGCAAATTTAAGAGAGTTATGTAAGTGTAAGTATTGAAAATACTTAGTTTATTTTTGG # Right flank : AAGAAATTGTTATGATAATGACTCTATAGAAAATTTCTTTGGTTATCTTAAAAGTGAAGAGATCTACTTAAATTTGTATACTTCAAGAAATGATTTAGAAACTGCTGTTCATAGCTATATACGTTGGTATAACTATGATAGATTACAATCTAAATTAAATAGCAGCACACCTGTAGAATATAAGCGTGCTGCTTAAAAATGACTATCTTATTAAAAACTGTCTACTAATTAGGGTTCAGTTCACATATAAGTGCTACCTTTTATTTTGTAGATAAAGTGTTTTACTGACATAAGTATTAAATTTACATTTTAAAATTATTTAAATATCAATAAATAATTAAATAGAAATTATTATAATTAACAATAGATTCCTTTTTCAAAGAAGTCTTTAATTTCATCAAGGTTATCAGTTTTTCCAAGTGCTAAGATAAGTTTTATTCTAGCTTTTTGACCTGGCAAGTCTCCACCAAATATACAGCCAAGATTTTTTAAATCTCTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7718-6506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000153.1 Clostridioides difficile strain HC129 NODE_153_length_8218_cov_14.6489, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7717 29 100.0 36 ............................. TTTAAAACCTCATGAGAGGTAAGGGGATGATAAGTG 7652 29 100.0 37 ............................. TTAAGTGATAGAATTTCGTCTCAATTGAGCAAAGAAT 7586 29 100.0 38 ............................. AAAAACAAAAAATCCAATTTTAAATTATTATTTTGATT 7519 29 100.0 38 ............................. TCAACTAAAGAATCAATATTTTTCAAATTAACTCTAAC 7452 29 100.0 37 ............................. TGTCATTTTTTCACACCTCTCTTATTTATATAATAAC 7386 29 100.0 37 ............................. GGTGTATTTATGTTGGCAAGAAGCGTTGATGAAATGA 7320 29 100.0 36 ............................. CTGAGTAACAAGGATTTTTATTAAAAGTATTATCAG 7255 29 100.0 36 ............................. TATCTTTAGAATAACAGTATCCATCATAATTATTTG 7190 29 100.0 37 ............................. TCGGTTAAATCACGAAGTATTTCGTTTACTGATTCAG 7124 29 100.0 37 ............................. CTTCTCAACATTATATATTGAAAATAATCTTGTCACT 7058 29 100.0 37 ............................. CCCATTTATTTACATTGTATCTAAAGAATATTTTAGT 6992 29 100.0 37 ............................. GCTGGTAAGTTTGATTTTATATCATGGTAGTAAGCAG 6926 29 100.0 36 ............................. TTAAATCCAAATTGTTTACCTGCAACAGAAATGTCT 6861 29 100.0 37 ............................. GTATAAATTGAAATCAGAAGGTTTTATTATTGATTTA 6795 29 100.0 35 ............................. CTATTAACTTTAGGTATTTTGTAAGATTTTTCCTC 6731 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 6665 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 6599 29 100.0 36 ............................. TTTATACCAACAATTTTCTTCTCCATACTTTTCCAT 6534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5171-4813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXG010000155.1 Clostridioides difficile strain HC129 NODE_155_length_8100_cov_12.8292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5170 29 100.0 38 ............................. CTCTTACGCTTTTTCAATCACTTTTTTCCTTGCTAAAA 5103 29 100.0 37 ............................. TGCGGTATATTGGAATTGAACAGGATGATTTAAACAA 5037 29 100.0 36 ............................. GATGTAACCGCACAGATATTCTGGCTAAAGAATCGT 4972 29 100.0 37 ............................. AGCAACTAGAGTTGATAAAATTAATTTAATAGGAATA 4906 29 96.6 36 ............................G AGTTTATGATTTTTCATTGCATATTCAATAAAAAAT 4841 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.9 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATTTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCACTGTATATAGATTACATTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGTGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTGGGG # Right flank : TTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAGTATAGAAATCTTATCACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTATATAATTACATATTTTTTCTGATTAAATAATGTGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTCTTATTTAATAAACTCATTTCTATATCTTCAAGTCCTATTAAATATTGATAAAATTTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAACTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTATAAATTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //