Array 1 265289-266720 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMM01000002.1 Salmonella enterica subsp. enterica serovar Cerro strain BCW_1607 NODE_2_length_446535_cov_0.295245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265289 29 100.0 32 ............................. TTTAAATTAATCGCAAAGACAGTTTTACTAAT 265350 29 100.0 32 ............................. CCCTACCGGGCAGGGGTTATTACAACCATTTC 265411 29 100.0 32 ............................. CTGTCGGGGATTAGCTCCCAGGCGTAGGCGCA 265472 29 96.6 32 ............................C CCGGCTACGTGCCGGTAATAGATTGGGACTCC 265533 29 100.0 32 ............................. GTGCAGTTGTTGTCGTGAAGATGGAGCGCGGT 265594 29 100.0 32 ............................. GATGCAGTCGCCAACGGCGGGACGCTATACGT 265655 29 100.0 32 ............................. ATACCGCCTCTTACATTGGCGCCGTATCAAAA 265716 29 100.0 32 ............................. GAATTGCTCGCGCATGTCCGGCAAAAATCCAG 265777 29 100.0 32 ............................. GCGTGCCACGCAGGGGATCTATCAGTTCGACC 265838 29 100.0 32 ............................. TATCTACACTGTTTGCGATTGTGAACGATGGG 265899 29 100.0 32 ............................. TAATTGACATACGCCACCCAAATATTAACTAA 265960 29 100.0 32 ............................. GTAAACCGTGTGCTGACAGGTCATAAACTCAC 266021 29 100.0 32 ............................. ATCCCTTCTTAGTTCTTATTCCGGAGCGTCAC 266082 29 100.0 32 ............................. AAAATAAACAGGAATCGTGGGCTGAATCCGGC 266143 29 100.0 32 ............................. TATTTTTTTTCAACTGGCTAAATTTTGTTGTC 266204 29 100.0 32 ............................. GAAATCGGCTATCTTTGTGCTGCCCGTATCGG 266265 29 96.6 32 ............................T AACGTCGTGGTCGTCAAAGTCGGTTTCCTCGA 266326 29 100.0 32 ............................. GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 266387 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 266448 29 100.0 32 ............................. ATTAAACGCCCCATCACCATTAGGCTTGGGGT 266509 29 100.0 32 ............................. GTAAACCGTGTGCTGACAGGTCATAAACTCAC 266570 29 100.0 32 ............................. TCAGCTACTTGAGCAGGCAAGTGAACGAGTTA 266631 29 100.0 32 ............................. ATCCCTTCTTAGTTCTTATTCCGGAGCGTCAC 266692 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGCGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCTATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 282966-284094 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMM01000002.1 Salmonella enterica subsp. enterica serovar Cerro strain BCW_1607 NODE_2_length_446535_cov_0.295245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 282966 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 283027 29 100.0 32 ............................. CGTTTAAAGACGGCCTGGCAAACAGCAATTTC 283088 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 283149 29 100.0 32 ............................. CCAGATAGCGGTCTTTTCTGAATCTGGCGTAT 283210 29 100.0 33 ............................. AAACCGAACGATTTACCCAAATGCCCCACCTGC 283272 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 283333 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 283394 29 100.0 32 ............................. CCGCCTGGCACTGGCTATAGGAATTAAACCGT 283455 29 100.0 32 ............................. CGCAGCTATCCCCCATCATAGAACGCTAATCC 283516 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 283577 29 100.0 32 ............................. GGTGAATCTTTCCAGCGTCGCCCTCAGCACGC 283638 29 100.0 32 ............................. CGTAACGCTTTCGAAAATAACCCGCAGCGCCC 283699 29 100.0 32 ............................. GCATCCCTTTACACGCCGTATTCTCATAGCAG 283760 29 100.0 32 ............................. GCATTGCTGCAATCACCTCAACCGGCGATCCA 283821 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 283882 29 100.0 32 ............................. CGGGCAAATGCCCGCTTTCTTGTTTCTATCAG 283943 29 100.0 32 ............................. CCAAAACTGAAATGACCAGTTACGTTGATCAT 284004 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 284065 29 96.6 0 ........T.................... | A [284092] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //