Array 1 1180-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOC01000182.1 Endosymbiont of Riftia pachyptila (vent Ph05) Rifp1Symgy, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1179 29 100.0 32 ............................. AGAAATCCAAAAGCAGGTTAACTGGCACGATA 1118 29 100.0 32 ............................. GCATACCCAAGCGCCTAGAATCTGCAAGTGTG 1057 29 100.0 32 ............................. CGACAACCATCCGGCAAATTCTGATCATTTAA 996 29 100.0 33 ............................. TTTGTTATGACGACCCGCAGAATTGTGGATGGG 934 29 100.0 32 ............................. TGGTACTTGGTTTAACTCACGAAATTGGAATG 873 29 100.0 32 ............................. GGAATGAAAAGCGTAGTGTGAAGGCACAAAAG 812 29 100.0 32 ............................. ATTACCTCTAAACCGAATTACGGTGATCCAAT 751 29 100.0 32 ............................. GGCTAGAGGTTACTGTTTTTGGCTGGGCCAGG 690 29 100.0 32 ............................. TCAGCATATACGTCCTCGCCTACCTTCTTGCA 629 29 100.0 32 ............................. GTATTAGGTGGACTCTCAGGTATTCTTTTGTC 568 29 100.0 32 ............................. CAAATGCAGCAACTTAACGCCACGCAGCGTGA 507 29 100.0 32 ............................. GTCTTCCCTCGCCTTAATGAGTATCTGGTTAA 446 29 100.0 32 ............................. TCCAATCAATTATTGAGGACTCTATCTCTGGG 385 29 100.0 32 ............................. GCTCGTTCCGCCGTCCAGTCGCTCTCCAACAA 324 29 100.0 32 ............................. ACTATCCTGTTCGCGCCTAGGGTCGCTGATGC 263 29 100.0 32 ............................. TTGTGCAGCAGCTGGCTGATGCAGATGTCGCC 202 29 100.0 32 ............................. CGCAGCCCAGGCCAACGTGATCGAAAAGAAGC 141 29 100.0 33 ............................. GACAGCGCTGTAATCGCCGATATGTGCAACCGG 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GGTCGGTGCGGGAAAAAATCTGTACGCAATAC # Right flank : GCAGCGATCATTATTTAGTCTTCCTGTATGCCAGTGTTCCCCGCACCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58-513 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOC01000197.1 Endosymbiont of Riftia pachyptila (vent Ph05) Rifp1Symhn, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58 29 100.0 32 ............................. CTAGCACCGAGCAAGAGCCGACGACCCAGGGG 119 29 100.0 32 ............................. TTCGTCGGAAAAATGGTCTTTGCCGTTGCGGT 180 29 100.0 32 ............................. TCTGCGCGGTGCAGAGCCGTAATATCCCTGAG 241 29 100.0 32 ............................. TGCACGTCAACAGACCTTCCGCCAGCCTTCCA 302 29 100.0 32 ............................. AAGCCACTGAATGACGGCGGGTGTTTTGCGGC 363 29 100.0 32 ............................. TTCTTGATAAGCAGCTTCGGGACGCCGTTATC 424 29 100.0 32 ............................. CACCCGCGCTTTACGGCAATTCTCCATTCATC 485 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GGTTCCCCCGCACCCGCGGGGATAGGCCC # Left flank : CCCCCGCACCCGCGGGGATAGGCCCGCCTCCAGGCTCTCCGCCTGCCCCAATAGCGCG # Right flank : TA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 38-615 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOC01000192.1 Endosymbiont of Riftia pachyptila (vent Ph05) Rifp1Symhi, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38 29 100.0 32 ............................. GTGTTTCGGTNCCACTCCGAAGTGCTGCAGCG 99 29 100.0 32 ............................. AGGCCCTTTGTAGAGCGCATGGCCTGAAGCCG 160 29 100.0 32 ............................. GCTTTGAGCGGTAGCGAAAAGGCTGTCTGCGT 221 29 100.0 33 ............................. TGCTCGCCGTCACCGATGAGACCTCTGATCAGC 283 29 100.0 32 ............................. CTGACAGCCAAAAGCAACGCGGTTTTGTTCAT 344 29 100.0 32 ............................. ATGATTATTTCGGCAGTCATACCGTTCATGAT 405 29 100.0 32 ............................. TTGGGAACGCCTGATGGCTATTTGCTTGAAGG 466 29 100.0 32 ............................. GNTGCATAATGCGCCAGCCGAATCCAGTATCT 527 29 100.0 32 ............................. TCAGCAACCCGGAATCCGCTAAGAGCCTTATT 588 28 96.6 0 .....-....................... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : AACCGAATCGCGGCCAAAATCCGTCGTGCTCTTTGGCG # Right flank : AAAAGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 550-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFOC01000195.1 Endosymbiont of Riftia pachyptila (vent Ph05) Rifp1Symhl, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 549 29 100.0 32 ............................. CGCTAGATAAATCGAAGCGCGTCATTGCTGGT 488 29 100.0 32 ............................. GCTTTAAGGCTGCGTATGTGCAATCTGACGAG 427 29 100.0 32 ............................. TCCCGCGCCTACCTAACAGTAAAAACTCTGTT 366 29 100.0 32 ............................. GCAAGTTCCTCAATGTCCCAGTCGATACTCAT 305 29 100.0 32 ............................. GCTCAAGCTCATTCCCGCGGATCATGTCCTGT 244 29 100.0 32 ............................. TTCAAAGTGGCAAGCTGCTCCTTACCACGGAC 183 29 89.7 31 ........................A.C.T TGTTCGGTCTTGCCCGGTTAACGTGGGGTAT 123 29 100.0 32 ............................. TTTGGTTGCAAAGAGTTGTCTGGGGATGATGA 62 28 96.6 0 ....-........................ | G,G [37,46] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GGGCCTATCCCCGCGGGTGCGGGGGAACC # Left flank : GCGATAGAAGGGGA # Right flank : CTGGTTGAGTGTCACGACCACGACAGGGGGTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCCTATCCCCGCGGGTGCGGGGGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //