Array 1 1194575-1192694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014699.1 Streptococcus pantholopis strain TA 26 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1194574 36 100.0 30 .................................... GGAGATACAGATAGCAGGTCTCGAGCAACG 1194508 36 100.0 30 .................................... TTTTTGGTCATTGACCATAGCCAAGCCGCC 1194442 36 100.0 30 .................................... GTTACTTTAGTCTCTCTAACATCAGACTGT 1194376 36 100.0 30 .................................... CTACTATAGAGAAAGTATAAACAGTTATTA 1194310 36 100.0 30 .................................... ACGTCCCTTTAAACGTACCCATATTAGCCC 1194244 36 100.0 30 .................................... CACAGACAAGACGATTATCAAGCTCACAGA 1194178 36 100.0 30 .................................... ACTGCATTTAGTATAATAAAGACAGAAATA 1194112 36 100.0 30 .................................... CCATCAGGAAAAGAAAGTCACTGTTGTACG 1194046 36 100.0 30 .................................... AAATATACCAGGATAACTTCCCGGCACGCG 1193980 36 100.0 30 .................................... GCCTACCTTATGAGGGATGACTATGAATTA 1193914 36 100.0 30 .................................... CTTAGCGTAAGGGCTATCCTCGTCAAGCAT 1193848 36 100.0 30 .................................... TGTCTAAACTGGATTTCAGACGTGCCCGGC 1193782 36 100.0 30 .................................... TAACGTGTGATCACTAGCCTTCAATATAAA 1193716 36 100.0 30 .................................... AGGTATGTAGGAGGTCTTGTTTAATGGCAT 1193650 36 100.0 30 .................................... ATCGGATGCCACTATATCAAAATGGGAGTC 1193584 36 100.0 30 .................................... AGCGTTTGGTATATTGTTGCAAAAGTCCAT 1193518 36 100.0 30 .................................... TGGATACATCTGCGCGCTGGACAATCCCTA 1193452 36 100.0 30 .................................... CCCCAACTCAACGTATATGCTGTAGTTGGC 1193386 36 100.0 30 .................................... ATAAATATGTCAATCTTATCAATGGCAATT 1193320 36 100.0 30 .................................... TTGATAACCGCCTTATCTGTGCCGGCCTGC 1193254 36 100.0 30 .................................... TTTATATTAACAAAAGTAGTTAATATAATT 1193188 36 100.0 30 .................................... AAAAAATCAATGGTTTCATCAGACAAATTA 1193122 36 100.0 30 .................................... ATATAATCATCTCGAAAGGAGGTGATTATA 1193056 36 100.0 30 .................................... AGTTAGAACAGGGACAGCTCCATCAGCTCC 1192990 36 100.0 28 .................................... TGCGTGGGAAGACCGTACCCATGGATAA 1192926 36 100.0 30 .................................... AGTGGTATTTTTGGGTGATTGTGGCTTTGT 1192860 36 100.0 30 .................................... GTCATATCTAATCTTGTTGCTGCATTTGCA 1192794 36 100.0 29 .................................... AAAAGCGTTATGGATTTGGAAGTTTTTAC 1192729 36 88.9 0 ..............C...............A.T..T | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.6 30 GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Left flank : CTAGAACTTATTAAAGCTTTAGGTGTAAAAGTAGAAACAAGCAGTGATACTGTTTTTGAAAAGTGCTTGGAAATTTTACAAATTTATAAGTATCTTAGTAAGAAACGTCTGTTGGTCTTTATCAATAGCGGGTCCTATTTAACAAGGAAAGAGGTTAAAGAGCTACTTGATTATATTAGCTTGGCCAACCAAACAGTTCTTTTTCTTGAACCGCGTAAGCTCTATGATTTTTCTCAGTATATTTTAGATAGAGACTATTTCTTGATTGATGAAATAAAGCATTAAGAAGGACTGCCGGATCAAATGTCAATAATGTAAAAGGAGTTTAGCTGCTTGTTTTGATGAAGGTCAGAGCATTAATAGAAAACAGCGTTGAAACCTTGATTTTAAAGCATTTTTTAGATAAAATAAAAGTGATAAAATGGAACTGTTTGATACTGAAGTCTGGCTGGGACGAATAGCGCGATTACGAAATTTCGTAACAAAAAATGTTCTGCGAG # Right flank : GAACTCATCTTTGAAGAATTGGAACAATTTAAAAACTAAGCACTTAGAGTAATCTAGGTGCTTTCTTGTTTCAATAAATTTGTACCTCCATGTCGCCTCTCCATCAGAAAAACGAGTAATCCGTGGGCAACAAGTCTGGAAATGGATATCTTATAATGGCTATGTGTAATGAAGATAACTCAACTATTTATGGCGATGGACGATTAGTAAATTTACAGATACCGTTAAAAAAGTTTTAGATTACAGAGGAGTTGTTTCTATCACTTCTTGGTGGGCAGATGATCCGCATGTCACTTGTACATGGAATTCTTATCTTGTTCTTAAAGGAAAACAAACGCCTACTTTTGCTAGTAGCAGGAATGCACAGCACAGAGGAGGATTTATCTGTTAATCCAAAACTCATTATAATCCTTGGATCCCGTCAAGTAGAGGGATACAAGGGTTATCAAGGGACAGGATTTAGAGTATTGGGAATAGGTAAATTAGTTAATGAAGGCGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1207643-1207007 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014699.1 Streptococcus pantholopis strain TA 26 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 1207642 24 100.0 37 ........................ CAAAAGCCACCGAAGAAGACCTCAAAGAGTTGCATTT 1207581 24 100.0 37 ........................ CATCTACTAAGCCAGCTGGAAGATAAAGATGAAATTT 1207520 24 100.0 37 ........................ TACCTTTTCACTTAGTTCTGCTTTTAGATTATCATTT 1207459 24 100.0 37 ........................ CCTAAAACTATCCGGTTTACCCATCTTTTGATAATTT 1207398 24 95.8 37 ...........A............ CTGGTGCCAAATGATATGCTGCTTGATTGACTGATTT 1207337 24 100.0 37 ........................ TATCCGTCAAGGGAACATCTATGTCGTTCTGAAATTT 1207276 24 100.0 37 ........................ CGGTTGATTAATTAGTTGTTGATGAAATGTTTTATTT 1207215 24 100.0 37 ........................ TACTGCCCAACCTTGCCGAGTGTCCAATTCTTGATTT 1207154 24 95.8 37 ..........T............. CGAAAAAGGAGACGAAGAATAATATGTTTGGAAATTT 1207093 24 95.8 37 ...........A............ CGGCGAAGTTACCATCAGGGCAAGCGTCTTTGAATTT 1207032 24 95.8 0 ....................C... | T,A [1207014,1207017] ========== ====== ====== ====== ======================== ===================================== ================== 11 24 98.5 37 TACCCGCACACGCGGGGGTGATCC # Left flank : ATGAAAATACTATTATAGAAATAGGAGCAATTAAAGTTAATCAAAATCAGATCGAAGAATTTGAGTATTTAGTGCACTACGGTAAGACGCTACCAAAGAGTATAAGCCGGCTGACCGGGATAAGTCAGGAACTTTTGAATCGTGAAGGCATGGCCCTTTCGACTGTATTACAAGAATTTTTAAATTTCATCGAAAACCTGGACCTGATTGGTTATGGTATTAATTTCGATATAAAATTTATAAATAGGGAATTAGCGCAATTAAATTATCCTTTGTTGAAGAATAGAACGCATGATTTAATGAGAACTGTAAAAAATGAAAAGCTATTTTTACCTAATTACAAACTCCAAACAGTACTAAAGGCATATGGTATCGAAGAGAAAGTACCTCACAGGGCTCTTCCAGATTCAAAACTCATTTATAAGCTATCTACTAAAGTAAATAAATTTTGGAAGAAGTTTAATCATGAATAGCGACTTTATTGGGATCTTTTAGTATTT # Right flank : TGCCGGAATTTTTCTACCATTGGTCAAGTTCCTTAAGGGATTTTCTTGAAAAAATGTTTTAATCGGCTATAGTTAGAGAGTGATTTCAGCTGTTTTTCTCAAAAAGTGCAAGCTAAAATAACATCTTACTTTGTCATTTCTTTGATAGGGCGTTAAGTGATATGGCAATAGATAAACTTGCTGATTTTGGGCTAATTTGTAATTGTAATATTTGTACACTCAAAAAGACCCCACAATCTCTGTTGGGGGTTCCCCGCTACAGAAATTATAGAGCCACTTAAATTTAGGCTAAGTCCGTTTTAGGTATTTTCAAATAGTTCAAATCGTTTTAGCAGTCTGAGCTATCATAGCCAGTTTCTTTTGGCGCTCTTGATCACTGTTCTTTTCGATCCCAGTTAGTTGACTGATTTTAACCGGCCGAATGCCGCAGCTTTTTAAAATCTGCCCTTTTAAAACTTTACCGTAATCTTGAGCAAAAGGGGTGATAAAGGCCGGTGTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCCGCACACGCGGGGGTGATCC # Alternate repeat : ATTTTACCCGCACACACGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //