Array 1 73040-70164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATD01000008.1 Streptococcus uberis 6780 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 73039 36 100.0 30 .................................... TTTCCAAGTTACTGTTGGATTCGGTTCTTC 72973 36 100.0 30 .................................... ATTGTGATCATATCCCCAGTCGACTCCTGC 72907 36 100.0 31 .................................... ATATTGTTCAAATGTCTGTTTACCTTGTCTG 72840 36 100.0 30 .................................... TAACTATTTTAGAGTGTTCTAGCGCCTCTT 72774 36 100.0 30 .................................... AATTTAACATCAATTATTGCGGTCCAGTCT 72708 36 100.0 30 .................................... TCTTTTTCAACTTTTTCCATGTTGAACTGT 72642 36 100.0 30 .................................... ATTTGCAAAACTACTAACAACTATTTCCAT 72576 36 100.0 30 .................................... GCATGTTGGCAAAAGTGAATGAGACATTTT 72510 36 100.0 30 .................................... TCTTGAATCAATTATCAATGACATCAAAAA 72444 36 100.0 31 .................................... CGCCAAATCGTCAAACGTTAAAGCACCACGT 72377 36 100.0 30 .................................... CATTGGAGAAGTTGGCCAGATAATTGATGG 72311 36 100.0 30 .................................... TGCTTGGGAAAACTGAAGGCGATGTTACAA 72245 36 100.0 30 .................................... GACTTCAACACAGTCATGCAAGCAACTACT 72179 36 100.0 30 .................................... TTCCGATTACCGACTCATCTTATATTGTTG 72113 36 100.0 30 .................................... CAAGATTTTTCATCCCAGAATTAAACGCCC 72047 36 100.0 30 .................................... AACGATAAAATTATACAAAAACTAGCAATG 71981 36 100.0 30 .................................... TCTGGAAATTGGTAAGTTGTGATAGTACCT 71915 36 100.0 30 .................................... TTTTAGCAATGGCCTGATTTCATCTTCTTC 71849 36 100.0 30 .................................... TTTAAGTCGTTTGTTACTATATGGATCTTT 71783 36 100.0 30 .................................... AGAAAGAAACGGTGAGTATAAACTAATCGT 71717 36 100.0 30 .................................... TTTGCTGATGCGGTAAGTGCAAGCAAGTCA 71651 36 100.0 30 .................................... CGTTTATCAAGCACGTATCACAGACGAATT 71585 36 100.0 30 .................................... GATAGGGGATGTTTAATAAATATACAGGTG 71519 36 100.0 30 .................................... GATAGGGGATGTTTAATAAATATACAGGTG 71453 36 100.0 30 .................................... TATCGAATCATACGCAAACAGCGGAGATGT 71387 36 100.0 30 .................................... TTTTCATCAGGATCAAATCGTTTACTAGTT 71321 36 100.0 30 .................................... TTTCATAGTATCGTCCTAACATTAATTCAG 71255 36 100.0 30 .................................... TTTGATAACTTAGCTAAGTGATAAGCTATC 71189 36 100.0 30 .................................... TTATGGCTGGAAAGTGATGGGTAACGACCC 71123 36 100.0 30 .................................... TTCCGATTACCGACTCATCTTATATTGTTG 71057 36 100.0 30 .................................... ATTTGTTCTTCCGCTTTAACTTCCGAAGCT 70991 36 100.0 30 .................................... GTCAGTGTTACGCATTGTCTGCGTGGTTTT 70925 36 100.0 30 .................................... CAGAGGGACGGAAAGCCGGTCAACAATTAC 70859 36 100.0 30 .................................... TTATTTACTGTTAACTGACTTGCTTTTGTA 70793 36 100.0 30 .................................... ATAGCCTTCAAGGAATAAAGAAAACGCACT 70727 36 100.0 30 .................................... TACACAGTAACAGTTTATAAAAATAAAGTA 70661 36 100.0 30 .................................... CTCTGTTCATAAGACCCCTCAATTTATGGT 70595 36 100.0 30 .................................... AAAAACGATTGAATGGCACAAAGACGAGGA 70529 36 100.0 30 .................................... TAAGTAATGACTTTTCCTCTAACCGTTTTA 70463 36 100.0 30 .................................... GTTGAATTGTTCTGGATCATCAAGTTCTCT 70397 36 100.0 30 .................................... TTACTACTAGCAATCTTTGCGGTTTTAACA 70331 36 100.0 30 .................................... CAATTCCTAATAGTTTTGCAACCATGTTGC 70265 36 100.0 30 .................................... CTTCAGCCATTGCCTTATCTCGTCTAGCTT 70199 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : AGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGAGTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAATAGCTTTAAAAATGTATATCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAAGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //