Array 1 44-1389 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWS01000015.1 Campylobacter sp. RM16190 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 44 37 97.3 43 ..........................T.......... GCTAAAAACTAAACCCTAAATGGAATAGAGTATAAAATTTAAG 124 37 100.0 43 ..................................... ATAGTAACCATGTCACACCTCCTATACTTAAATTAAGAATAGG 204 37 100.0 35 ..................................... AGATGGAAAGGTATATTTAAGAACGTTATGGAGAA 276 37 100.0 41 ..................................... ATACTCTGTTTTGTTCAGTGTGTTGTACATTTAAGATTTCC 354 37 100.0 34 ..................................... TCAAAAACCCCACCTCAATCTTTTCTCCATTCTT 425 37 100.0 35 ..................................... CAATTAAGTAGCCCCAAGAGTTATTTTGTAAGAAT 497 37 100.0 41 ..................................... AATTGTCCAACTTCCTTGTTAGACAATTTACCTACTAGCTT 575 37 100.0 39 ..................................... AGAACCCTATTTGGGTATACTTTTCCTGTAAATCTCTCT 651 37 100.0 45 ..................................... ATGAGGATACCGATTATACCTATACTAGCATCTACCCAAGACATA 733 37 100.0 37 ..................................... GTTATATCAAAATCGTCTTTAGTAGCTTCATAGTATG 807 37 100.0 39 ..................................... GAATGATCCTTAAGACTGTCTAACCATTTGAGACCGGTT 883 37 100.0 40 ..................................... TTTCAAATCCTTTCTAGTTGACTTCCATAAGCCAACAACA 960 37 100.0 34 ..................................... CCCATTAGATGCCATTGTTAGTTTTAATACTATT 1031 37 100.0 41 ..................................... ATATAAGTCTATAGACTATTTGTGAATTTGTTTAAATAATA 1109 37 100.0 48 ..................................... AGTTTTCAATCTCTATCTTATGCTTTTTCATATCTGTCACAGGACAAT 1194 37 100.0 45 ..................................... GGATCATACTCTCCTCTAGCTTCTATAGTTATATCCTCCCCTGTA 1276 37 100.0 40 ..................................... CTTTAAAGACCTCGCAATTGGTCCTATCCCCATAATGAGG 1353 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 18 37 99.8 40 ATTTCGCTCGAGCTTCCCCGTTTTAGGGGATTGAAAC # Left flank : ACTCATTTCTATTTTTGTAATAGTATAAGGTTAATTGACGATAA # Right flank : CTTTATTTGCTGTTCAGAAAGTGTTGATTTAAGATGGTATTTCGCTCGCGCTGCTCATTTACTAAACAACAAACGGTAAATCGCTCTATTTTATTTACTGCTATTACTACTCTTCTAACACTAAAAATTTCAAATAAAATAAAAATTCAAACTTAAAACGACAATATATGACTTGAGCTTTTTGTATAATTGGATGATTTTGTTTCAAAGACCTAGCGACTAAGAGTAAAAAAACAAAATTCAAAAATAAAGGAAATACAAAAATGGATAGGCTATATTGGTTGTCGTTATTTTGGCGGGCTATAAAAAGAGTAAAAACGAGCAAAATTCTTTTAGTATGGTTTAATAATGTGATGACTGTTCTTAGCACATTTATGATGGGAACTAAAAACTAAACCCTAAATGGAATAGAGTATAAAATTTAAGGATTAGCGGAGTAGTTTAAGCTTTTTAAGGAGGGGCAGGCTTGAAAGAGAGAATTCATAAATTTAGAACTCTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCGCTCGAGCTTCCCCGTTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 2652-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWS01000005.1 Campylobacter sp. RM16190 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 2651 37 100.0 45 ..................................... AAAATGTCCAGCCTATAATAAGAACAGCTAATGTTCAACCTATTA 2569 37 100.0 43 ..................................... AATTTTTCCCATTGGCCCACCTTTTTTTATTTAGATTAAGCGG 2489 37 100.0 40 ..................................... ATTTTACCGAAGTTAGTCTCTTTCCAGGCGATGGCTGCCA 2412 37 100.0 43 ..................................... TCTCCAGCTCTTGATCAGCTGTAAGAGCTTCATAGGCTTTATA 2332 37 100.0 41 ..................................... ATTAAGATTATCAATTTGGCGGCTTTGGCTATCATCCACCT 2254 37 100.0 43 ..................................... CTTAGGGTCAACTTCGAAGAAATCTTCTTCAGTTACCCAACTT 2174 37 100.0 37 ..................................... GTTTTTTGTCAGTGACCTTTTTGATTTCTTTTACACT 2100 37 100.0 42 ..................................... GTATTTGTTATCAAGATCGTTACGAGTAACGAAAACTTGATC 2021 37 100.0 40 ..................................... AGCCATAGCTATTTCTCCATCCCCGACTCCGTCGAGGATG 1944 37 100.0 43 ..................................... TTTAAACCTGCCATTTGACTCAAGACCTTGTATTACAAGGTCA 1864 37 100.0 37 ..................................... TTTTATACTCCTTGTATTAATTTTGTATCCTTATTCT 1790 37 100.0 43 ..................................... TTGATGTTCAATATGCTCAATATCCTCAAAATTTGTATCAATA 1710 37 100.0 45 ..................................... ATATCCTCCACATCTTTTTCAATATTTACCATTCCAAATATTGTA 1628 37 100.0 43 ..................................... CGAGTTCCCTCGCTTGTTTGTGTCTTTATGTTAATAAACATTT 1548 37 100.0 35 ..................................... ACTCCACTTCGGTCAAGGTATAAACATCATACTCA 1476 37 100.0 43 ..................................... AAACATCCAAACGGATTTCTCCGTCATTGCCCATGACAAGTTT 1396 37 100.0 42 ..................................... GCCTGATGTGCTTGTGCAGCAGATTGTAAGTGTAGTTCCATT 1317 37 100.0 36 ..................................... TAATATACTATTACCTTTACCTTCCGGTTTATTATT 1244 37 100.0 37 ..................................... TAAGCTCCGCCTTAATTTGGCTGCCTATTAAATTACC 1170 37 100.0 41 ..................................... CCAGTTAGTTCAACATCATCACCAGGTAGAATGAGAGGATA 1092 37 100.0 42 ..................................... TTTTTTTCAACTACAGACGCACCTAGATATCTTAGATTAGAT 1013 37 100.0 41 ..................................... ATATCCTGCATTGTATCCTTAAAGCTATCTTCAACCCTTTT 935 37 100.0 48 ..................................... ATATATATTTTAAAAATCATCATAGGAGGCTCTCCCCTAGGTTAACGT 850 37 100.0 43 ..................................... TTTAGTCTCTATCGCGTTTTCCAACGCTACGATTTGATCTTCG 770 37 100.0 43 ..................................... TCTTTCGAAGTTTTGGTTCACCATGTTTTGGTGGTGGGCCATA 690 37 100.0 42 ..................................... ACCCTAATGGCGGTTTTAACCGCAACTTCTAACGTAAACGCG 611 37 100.0 41 ..................................... GGAATTTTTCAAATCGCCTTCTGCGAATTTCAGAGTATATT 533 37 100.0 43 ..................................... GATAGTATGTAGTTTTACTATCCATAGTAGTGTCAATTGTTTT 453 37 100.0 35 ..................................... GTTAGGATCAAAAGGATCTACATCTTGTAATTCAG 381 37 100.0 44 ..................................... TTTATCCGCTATTGTCATCTCCTCCTCTTTTTTGCGTCTGTTTA 300 37 100.0 43 ..................................... ATTTTAGTCACGGTATCTCTACCAACTTTTGGACAGAATACCG 220 37 100.0 37 ..................................... AATATAGCATTTAGACTATCGTCTAAAGTGCTAATAA 146 37 100.0 36 ..................................... CTTCTTATATTCACTCTCAAACCGTGGCGTAAATTT 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 34 37 100.0 41 ATTTCGCTCGAGCTTCCCCGTTTTAGGGGATTGAAAC # Left flank : AAACCTGCTTGGCTAAAAGTGAAAGTCTAGGAGAAGGCAAAATTTTTAATCCACTTGATACTTACATCTAGACCTTTTTATCCGCAAAAGGTTTTCGAACTTTTTAAAATTTCAAACCTACCCATTAATCGATATTTTATATTGGTTTAAGTATAAATATATTCGAAAATCCGAAATTTTACATTTTCAAAACCTAGATTTGCGTATTTTTGTCTAAACTCAATTTTTAAAAACTCAATTTTACGGCTTTTAACCTATCTAAATTTGCTATAAATTTCGAAAAAGCACAATTTTGTTAAATTTTATTTTATATTTTCGAACTTTTTAGCTATTGCAAATATGCTTTTTATCGATACTTTAATGTAACTATAAGCAAAATACCTCAAATTTGGAAAATGTTTTTCACTGCATTTTCGAACTTCTTGGCTCTTTGTGATATAATGCCGTTTACAAATAGTTCCTTAAAAACTCATTGTTAATTTTAATGCGTTTTATTGGCT # Right flank : CATTTACCATGCGGTATACTCTCTGGTTTAAGAGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCGCTCGAGCTTCCCCGTTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 95587-100144 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIWS01000005.1 Campylobacter sp. RM16190 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 95587 29 100.0 35 ............................. TATGAAATTTCCTCGTCGTGAAGAAGAGCTAATAT 95651 29 100.0 36 ............................. TTCAAACACAAAAAACAAGCACTTTATCGAATACTT 95716 29 100.0 36 ............................. AAAGAAACCGAGGAATTAGACGAGCTTTCAGCATGG 95781 29 100.0 35 ............................. TAAAATAGAGGTTATAGAGGATGATAAATCCGTCT 95845 29 100.0 35 ............................. TATGGATTTTCTGATTTAGATGATTTGCTTACTGC 95909 29 100.0 36 ............................. TCACTGTCTTTAAATCTTTGAGGTATCACAAGATAC 95974 29 100.0 37 ............................. TTAAGCAACGTAAGGGCAAAGGCAAGAGCAACAAAAG 96040 29 100.0 37 ............................. TAGCAGATAGCAGGACAAAAAGGGCTAAATATGCAAA 96106 29 100.0 37 ............................. TATTTAATAAAGATAGAGAATTTTTAGGAATTGCAAC 96172 29 100.0 36 ............................. TGTATTTCACTCTTTGAGAAGATATTGGCTCTCGAA 96237 29 100.0 34 ............................. CAGATTCAAGTTTTGAATAGTTTGGCTAGTGCTA 96300 29 100.0 36 ............................. TTCTTGTTCCAGAGGAAACATATACATATTCCCCAA 96365 29 100.0 36 ............................. TATTTTTTCCGTATACCTTGCACCTCTACATCTTTA 96430 29 100.0 37 ............................. TCTGCTCTGCAAGCCGCAGCCATAGTGTGCGATCACT 96496 29 100.0 35 ............................. TTTTCAAAATCTATATCGCTCCATTCAAGAGCCAG 96560 29 100.0 37 ............................. TCTATTAGCTCTTTGTTGGCTCTCTCAAGCTCTTCTT 96626 29 100.0 36 ............................. ATGCATGGAGCAAGAATCAAAGATCTCTTGGCTTTA 96691 29 100.0 34 ............................. AAAAGCAGCTCAAATTTGCCGAGCGTGCCGTCTT 96754 29 100.0 37 ............................. TGTCTTACCCTTGCGCCTACTTCATACGATGTATCAC 96820 29 100.0 37 ............................. GGGGTTAATGTTGGTAAGCATTTTAATGCTTATTCTG 96886 29 100.0 35 ............................. TTGGCACTGCATCGCTTTAGCACCGCCGGCAGTGT 96950 29 100.0 37 ............................. CTCCCCAAATGTTCTAATCAACAACAATAAAAACATA 97016 29 100.0 36 ............................. AGAGCAATGCATTTTTTTATGTAGCTTGCGAAATAA 97081 29 100.0 35 ............................. CCTGATGAAATAAAAATGAAAATAAAAAGAAATTT 97145 29 100.0 36 ............................. ATCTTAATTAGTCGCAAATGATGTCTTTGTAATGCC 97210 29 100.0 36 ............................. TTAAGCCCATAAAAGAGCTTTAAAGGCTCGTAGAGA 97275 29 100.0 36 ............................. ACATCATAGCCTAGTATATTTTTTATCTCATTTAGT 97340 29 100.0 38 ............................. CTTTGCAAGATAGTTTCAAAATAAGAAGCGGTAAAACC 97407 29 100.0 36 ............................. CGGCCTGAGAATTGAGCCTCTCTGATCTGACTGAAA 97472 29 100.0 34 ............................. TGTGGAGTGCGAAAGAAGATGAAGAAAATTACTT 97535 29 100.0 35 ............................. AAAAATCTCAATGTATAAATAAAAGAGGTAATCCT 97599 29 100.0 38 ............................. TTATTTGCGAGGGCGAAAAAGATGCGCTAAATTTACTC 97666 29 100.0 37 ............................. TGGAACTCCTTACGGGCCTGTATTCTTCTCAAAAAAA 97732 29 100.0 35 ............................. TGAGAAAAACCGGAGCAGTCTTCACTGTCAACACG 97796 29 100.0 36 ............................. TTTCACTTCCTAACGATTATAACGTTATTGAAGCTT 97861 29 100.0 37 ............................. ATATATAGAACAAAGAGTAATTTTTTTAAAGAATTGA 97927 29 100.0 36 ............................. AAGGCGTCGATAGCGTAAAAGATGACGGCATAGTGA 97992 29 100.0 34 ............................. TGAAGAAAAAGGGATCCGTTTTTGTTGTAAATCC 98055 29 100.0 35 ............................. TGGACGAGGAGTAATAAAACATGAGAACTAAATTT 98119 29 96.6 36 ............T................ TAAACAGTATCAAGAGCGTCAGAGTATTTAGATTTA 98184 29 100.0 36 ............................. TTTCGCCTACATAAGCATAGTCTGTTCGTTCAAGCT 98249 29 100.0 37 ............................. CAATGTAACGATGTAACGCTCCTAGAGAAAGAAATAG 98315 29 100.0 38 ............................. ACGTAACGGGCTATCAGGGTGATGGCGGCGAGGATAGT 98382 29 100.0 34 ............................. TACATTAGGCTTTGAGTGATAATATCTCCGCTGT 98445 29 100.0 34 ............................. CTCTTACGATATTTTTAGTATGATGAATTCTTGG 98508 29 100.0 36 ............................. TAAAGAGCGCAACCGCCATCACACAATCAAGTAATC 98573 29 100.0 34 ............................. AAGACTACTAGCGTGTAGAATTTGCAAAAGTCGC 98636 29 100.0 35 ............................. GCCCTGAGCTCATCACTTAGGTTATAGCGATCAAA 98700 29 100.0 36 ............................. TATAACCGATGGTAAGATTAGGTTATGAAAAAGAAA 98765 29 100.0 35 ............................. CATATATGGAATATGTATTTTTTCTAATACATCTT 98829 29 100.0 34 ............................. TATTCAAAACAAAAAAGGCTTTAAAAACGATAGT 98892 29 100.0 36 ............................. GGTCTGAGAGGCTCACTTCACAAGGAGCAAAAAGTC 98957 29 100.0 35 ............................. AAGGCAGATTCAAACCAAAAGACGCCAGTGCAAAA 99021 29 100.0 34 ............................. TTGATACGGCTAAAAAATGGACAGGCGCAGTTGA 99084 29 100.0 35 ............................. CTACTCTTTGGTGTCTTTTCGCCTTGTCAATCAAG 99148 29 100.0 35 ............................. TAGTCTCTGCCAAAAACTCTGTACTCGCCGTCTTT 99212 29 100.0 37 ............................. AAAAAGGTGCATACTCTGGCAATAGTTTTTCAGATAC 99278 29 100.0 35 ............................. ATCCTGACTCAAGGCCAAGTAATCAAAAAGACGGG 99342 29 100.0 35 ............................. TTTTTTCTCTTTTTCTGTTAATTTTTTATTTTCTT 99406 29 100.0 34 ............................. ACGAGGCTTCGGGATTTACTAAGGCCATTACCGG 99469 29 100.0 37 ............................. AAAAAGAGTGCGGACAATATAAAACAGTTTTATTTTT 99535 29 100.0 39 ............................. TATTCAATAGGACTACTCTTTAATCCTGCCTTGATCATC 99603 29 100.0 35 ............................. TGCTAACGCCCTAAAGGCTGCGAAAGAGGCATACG 99667 29 100.0 36 ............................. TTATGAATTTTTAAATCTCGCATTACTTCCTCAAAA 99732 29 100.0 35 ............................. TAGTAAAGAAAGCACCGAATAAGATACCAAATAGG 99796 29 100.0 35 ............................. ATGTTTCAACCATGGTGCCCATTAGATATTCAGAA 99860 29 100.0 35 ............................. TCTTGTCTGCTTCTTAAAATTTCGCTCTTTTCTAT 99924 29 100.0 36 ............................. TAATTCCGTTTATACCGTGCGTTATTCAAGTTTTAT 99989 29 100.0 36 ............................. ACCATATTGAAAAAACACTAGACGGTAGAAAATTTA 100054 29 100.0 33 ............................. TAAAATAGGCATGACACGCAGATTTGATCCTAT 100116 29 86.2 0 ........................T.CTG | ========== ====== ====== ====== ============================= ======================================= ================== 71 29 99.8 36 GTTAGAATTTGCCTTTTAGGCTTTGAAAC # Left flank : GAAATTTATAAGACCGAGCTTGATCCTAGAATCGGCTTTTTACACGAGCCAAATTATCGTTCTTTAAGCTTGCATTTGGATTTGGCTGAGATTTTTAAACCTATTTTAGGTGATACTCTAATATTTTCGATGTTGAATAAAAAAGAGATTACTGCAAAAGATTTTGAGACTAATGCCGGAAGGATAAAATTTACAAATGAAGCAGTGCAAAAAATAGAGATGAAAATGATATCTAAATTAACGGATCAGATAGAAGCAGGAGGACAAAAGCTTACATGGAGACAGATTATTCGCAGAGAAGCAAACCGGCTTAAAAAATGTATATGCGAAAATGCACCATACGAAGGATTTGTATATCAATAAAGCTTTGCTTAAGATTTTTTAATGCTTGTATTTTAGGGTTTTGTATATTTTTGCATCATTCAATTTAATTTATTTGTAAGTAAAATGCATATAGACTTGTGTTTGAGAATTGCCCTATAATTATATATTTGGGTGCT # Right flank : GAATAGATAAAAATAAAAAACAATTTGGAGGTAATTAAAGCATGACTTTAAAAGAAGTGAGTGAAATAACACAAATACCTTATTCAACTTTGGCATATTGGAATAGATGTAGCGACTATAAAAAGAGCCTCATAAATTTTCTAAAAGCTAGTGATAGATCAGTACTTTTAATGTATTTTCAAGAAAAATCGCACTCTAAAAAAGGTGCTAAAATTTCTATTTATAATTTTATTTTTTGAATTATCATTGTTTTTAAATAGAAAATTTATGTATCGGATAAAACTTGACATATTTGAGATTTTATATATATTTTAAATTTTATTCATATAATATTATTTTAATTTGCTATCCAAAGGTATTAGATGAAAAAAATTTTAATCATCGCGGGCTCTTGTAGCAATGGTGGAGCTGGAATTCAAGCTGATATCAAGGCTTGCTCACATTTTGGTTGCTATTCAGCTACCGCAATTACAGCACTAACTGCTGAAAATTCCAATAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAATTTGCCTTTTAGGCTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //