Array 1 351-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAA01000004.1 Moraxella catarrhalis strain 613_MCAT 18_372_3870, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 350 28 100.0 32 ............................ TACAAAATGACAGCTATCCCATCCGCTCATAC 290 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 230 28 100.0 32 ............................ ATCTTTGTTTTTTGTGATGTTGCAAATCTCTG 170 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 110 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 50 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTTTTGGGTTTTACATCTCAA # Right flank : AGTGGGCAAGTCTTTGCTGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61468-61037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAA01000011.1 Moraxella catarrhalis strain 613_MCAT 39_61489_953667, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61467 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 61407 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 61347 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [61305] 61304 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 61244 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 61184 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 61124 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 61064 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTTTTGGGTTTTACATCTCAA # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCACACAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //