Array 1 17563-16670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXB01000034.1 Neisseria meningitidis strain NM1483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17562 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTTA 17496 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAA 17430 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGA 17364 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTTA 17298 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17232 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCTA 17166 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17100 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTA 17034 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16968 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACA 16903 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 16837 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 16771 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16705 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 24193-23102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXB01000034.1 Neisseria meningitidis strain NM1483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24192 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 24126 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24060 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23994 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23928 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23862 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23796 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23730 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23664 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23598 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23532 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23466 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23401 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23335 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23269 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23203 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23137 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTCCCTTTCTCATTTCGCAGTGCTACAATAACGGCAACCCACTAAATTTTGCAAATGC # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //