Array 1 649651-646116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHR010000001.1 Listeria marthii strain FSL W9-1317 NODE_1_length_928620_cov_73.209291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 649650 29 100.0 36 ............................. TTATGATTAATTCATCGGATTGGCAAGTGTGAACGA 649585 29 100.0 36 ............................. GTAGAATGTGCCATTAGCATTACTATCCGTTTTAAG 649520 29 100.0 37 ............................. TATTGAGTTTTACTAAAACTATGGTGAACTTGGGTGT 649454 29 100.0 35 ............................. TAAAAAGGAACAACAAGATAACCAGTTTTTTCAAC 649390 29 100.0 37 ............................. AAAAACATTCGTTTCTTAAAAATGTATCTGGATGTTT 649324 29 100.0 38 ............................. TTATACTTCGATATATAAAAGGTCAAGTAATACCGCCG 649257 29 100.0 36 ............................. GAAAAATTGGAATACTTAAGGAATCGCAAGGGTTGG 649192 29 100.0 35 ............................. TCTTTAGTACTGCGATATTTAACGCGTTGCTTACG 649128 29 100.0 38 ............................. CTATACTATATGTAGGTGTATATAGTAGTGGTTCCCGG 649061 29 100.0 37 ............................. AAATAACTCGGTTGCTTTGTTCCATGACATTCCTGCG 648995 29 100.0 35 ............................. TTCGGTTTTGAAGTTCGTAATCTTTTGGGTACATA 648931 29 100.0 36 ............................. AATGGCATCGGCAACTTCACATAATAAAGCGGCTCT 648866 29 100.0 35 ............................. CTCCTTTGGCTCGACACTTCAATGCCATATTCGCG 648802 29 100.0 36 ............................. ACGGGATTCTAATTCATTCCGCGTATTCTAGCGGTG 648737 29 100.0 34 ............................. TCATTTATAAATTACTCGTTTACTCCCTTTTTCC 648674 29 100.0 36 ............................. CTTAATTTTACCTGAATTTAGTCGCGTGTTATCCCA 648609 29 100.0 38 ............................. TCGGCACTTCGTTTACAGCCTTCTGGATTGTTTGAAAC 648542 29 100.0 34 ............................. CTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTT 648479 29 100.0 35 ............................. ACGGCACTAATGCTCTTACCAGTATTTTGCATTTT 648415 29 100.0 34 ............................. TTTAGAAAAGCCACGTATTCCGCAATTTCTTTAT 648352 29 100.0 35 ............................. TTTGTAATGCTACTACCAATAGCTGGAAGTCTAAG 648288 29 100.0 36 ............................. ATTGCTAGAGTCAAAAGTAGAAAAATATTTAAGAGA 648223 29 100.0 38 ............................. AATGCTTTTGTGGATAATAAACGAATTGATAACGCTCT 648156 29 100.0 35 ............................. GTACCAGTTCGAAGTACGGGTTACGCAGAAATGAC 648092 29 100.0 35 ............................. TTCGGAATGCAAAGTCAACTAAAAAAATATTTCAA 648028 29 100.0 35 ............................. TCTTCTGTTCGACTTCTGCTACATACAGCATTAAG 647964 29 100.0 38 ............................. GCTGAATAAGAACTACCTTTTCCGCTCGAAATCCCTCC 647897 29 100.0 35 ............................. TTTATATATACCGAACCAGACAGATATACACCAGC 647833 29 100.0 35 ............................. AGCTTATTACGGCATCCTTAGAGGCGTTGAATATG 647769 29 100.0 36 ............................. CTTAATTTTACCTGAATTTAGTCGCGTGTTATCCCA 647704 29 100.0 36 ............................. AAAAGAGAAGAGCGAAAGGATGTGAGAGTCGATGGC 647639 29 100.0 37 ............................. TTAGCAACAACTTTCAACCAACTGCAAGGTTCCGTTG 647573 29 100.0 35 ............................. CCTAAATAACTTATTTTCGTTCGCGCTCCAACTGG 647509 29 100.0 34 ............................. AAGGCAGAGAACTTCGTTGGACTTCGTATAACTA 647446 29 100.0 37 ............................. ACAGTTCTGTTTTGTCCGCTTTCTGTAAAATAAAACG 647380 29 100.0 36 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGT 647315 29 100.0 36 ............................. AGTCCAAAGACAACGAATATCACGCCGAACAATATC 647250 29 100.0 37 ............................. ATGTTTGCAAAAGCAATTTTGTCCATTCGAAATTCTT 647184 29 100.0 36 ............................. ATCTCTACGCTGGAAACCGAGAAAAGAGCAAGCATA 647119 29 100.0 36 ............................. CATACTAAGTTGTGGAGGGACAGCGAATTATGAGAG 647054 29 100.0 37 ............................. TCGCTTGAAAATAAATTGGATATTGATAAGTATATAA 646988 29 100.0 35 ............................. TTTTGATTTTAAATGTGAAATTGATACATTGGAGG 646924 29 100.0 36 ............................. GCGGCCAAAAACGCGGGCAAGGGTGTAGCCAATAGC 646859 29 100.0 37 ............................. ACAATTATGCCAATTACAGGTAGCATTGCTGTAACTA 646793 29 100.0 35 ............................. TTGCGTGCTTCTGTGGAAAATCTTACACTAGAAAA 646729 29 100.0 35 ............................. TGTTTACGCTGAATAAGAAAAGTAGATTCACCAAT 646665 29 100.0 37 ............................. TATATACTCTTCTACGTTCAGTATTCTTTGTACTCAC 646599 29 100.0 34 ............................. TCCGATGAAGAGGTTTCGACTTCCACGGAAAATT 646536 29 100.0 37 ............................. AGCGCCCGCACTGGGTCTTCTTTCGCTTTATCAAACC 646470 29 100.0 35 ............................. AAAAAAGAGTACCTGGGAAGCGGCAACTTCACAAA 646406 29 100.0 36 ............................. AAGGTCACAGCTAAGTATATGTCTAAGCTTCTTTTT 646341 29 100.0 38 ............................. TGTACAGAATCAATTAGGTTAGATACAAATTGTGTACG 646274 29 100.0 35 ............................. CAGCCAGAAAAAGAGCCAGTGAAAGAAGAGCCACA 646210 29 100.0 36 ............................. TTTGTCCAAGCTAAAAAGAATAAACCAGTTAAGCGC 646145 29 86.2 0 ...............C......CC....C | A [646120] ========== ====== ====== ====== ============================= ====================================== ================== 55 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : ATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAATTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGAGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAAGCGCCGGCAACCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCCATTCCAGCCCCAGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 665143-664664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHR010000001.1 Listeria marthii strain FSL W9-1317 NODE_1_length_928620_cov_73.209291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 665142 29 100.0 36 ............................. AATAGTTTAGAAGGCGATCTATTGAAAATGACATTT 665077 29 100.0 35 ............................. AGCGTCCATCTTTATATATTTTTTTCGTGATATAA 665013 29 100.0 36 ............................. GAGATTGCAGGACAGGTCCAATTTGCGCGATTTGTG 664948 29 100.0 37 ............................. ACATTACTGCAAAATGTTGAAACAGGGCATGCGCCTT 664882 29 93.1 34 .......................A...A. ATTAATAAAGAGATTCGCTGGATTTTCAATTTTG 664819 29 93.1 35 ..............A............A. TCGGCAGAAGTTATATCTATGCTTGCAGGCACATT 664755 29 89.7 33 ............C...A..........A. CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 664693 29 75.9 0 AC.....T......A.A......A...A. | A [664669] ========== ====== ====== ====== ============================= ===================================== ================== 8 29 94.0 35 GTTTTAGATACTTATTGTGAAATGTAATT # Left flank : GCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCTGTAGAAGTCATCGCTTGTGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCATGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGAAGAGTTTGGTGGTTTTTTTCTTTTGAAAATCATGTGGAAAAGGGCGGATTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGACTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCTAGCGG # Right flank : GAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATAT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //