Array 1 8543-8908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLW010000071.1 Desulfovibrio piger strain An418 An418_contig-110_70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8543 36 100.0 30 .................................... TTCCCCCTTCCGTGCGATGTCTCTATATCT 8609 36 100.0 30 .................................... TGCATCCGTGTGCCCCGCGTGGTCTCATGG 8675 36 100.0 30 .................................... CACCCGTATTGCCATGTCCCTGAAGAATGG 8741 36 100.0 30 .................................... CTTCCAGTGTCTTGTACCGCTCATGGATGC 8807 36 100.0 30 .................................... TCACCAGTCAGGATGGAATAATACTCGCCA 8873 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 AGATTAGCAGAGGGAAATTGGGAGGGCAACCACGGC # Left flank : CCGTGCGTGCCTATTATGCCGAAAAAGGGCCTCTACCGCCCTTTCCCCAGCTTGGGGAATAAGGGGGGAGCATGCCCGCGGAAGAGGTGCGATACATGCGTTTGCTGGTCTTTTTCGATCTGCCGGTCAAAACAAAGGATGACCAGCGGGAGGCCAACCGCTTCCGCAACTTTTTGCTGCGGGACGGCTATGACCGGGTGCAGCTCTCGGTCTATGCCCGCGTTTGCCGGGGCCCGGAAAATGTGGAGACCCATATCCGGCGGCTGCAAAAGAACCTGCCGCCGCACGGCTGTGTGCGCCTGCTGCAGGTGACGGAAAAACAGTACGGCCGCATGAGATTGCTGGTGGGGGACATGCCGGTCATGGAAAAGGAGGCGGCCACGCAATTGCTGCTTTTCTAAAAAGTGCTGCCCATACAGCGCCCCATACGGAAAAACCTTGTGCTCTTACCGGAAAAAACACTGTTTTCTCCAGTAAAAACACAAGGTTTTCCATTTTCC # Right flank : TTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATTAGCAGAGGGAAATTGGGAGGGCAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 104382-103010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLW010000001.1 Desulfovibrio piger strain An418 An418_contig-110_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 104381 33 97.0 34 ................................C CCATCGTCCAGGATCAGGTCGATGCGGGCCTCGT 104314 33 97.0 33 ................................C AGCAGCTGGTGACGCAGATGGGCGGCCGCGTCA 104248 33 97.0 34 ................................T CAACGGTTCTTTGACAATCACATAGAGTAACTTG 104181 33 97.0 34 ................................T CTTTGCCCTGCAAGCGGCTGGTCGAGGAGGAAAA 104114 33 100.0 35 ................................. TCCCGACCCGTCTCCTTTGGGACAAGTGGGAGGAC 104046 33 97.0 33 ................................T TTGTCACAGAGCAGCCCGAGAGCACTACGTAGA 103980 33 100.0 33 ................................. GAAACAGCTGCGCGTCGCGCTTACTCAACTGAT 103914 33 97.0 35 ................................T GCGCAAACTCTTTTTGATGCTCATAATTTGCCTGA 103846 33 97.0 34 ................................T GGGGAGTGACGTTTTCACTCCTCGCAGGTCATTC 103779 33 100.0 32 ................................. GGTACGCGCTGGCCGGGCAAAGCTCTGGCGGG 103714 33 100.0 33 ................................. TCGGTCAGCGGCGTGTCGGCACTGTCCATGACC 103648 33 97.0 35 ................................T CTGCATATAGTCTATTCGCATAATCTTTTCTTAAC 103580 33 97.0 35 ................................G CTATACTAGAGTCCTCATACCATGTACATGAACTA 103512 33 100.0 35 ................................. CCAGCCCCATGCGGCACAGCTCATACAACACGCGA 103444 33 97.0 35 ................................G CCTGCGTGGTGTGCAGGAACATCACGATGTCGGCA 103376 33 100.0 33 ................................. TTTCCTGATGATACTGCTCGACAATCCGACGAA 103310 33 100.0 35 ................................. TGGCTTATCGTCGCCGCCGTCGTCGTGGTCGTGGT 103242 33 100.0 35 ................................. CCTCCGGGGGCAGTCTGAAGCACCTCGCTGAATTG 103174 33 100.0 33 ................................. AAGGCCTCTCCCGGGAAGAACTGGCCGTGCATC 103108 33 97.0 34 ................................T GGACATGGCGGGCCAAGCTCACGGATGCCGAGGC 103041 32 87.9 0 .......................-......GTG | ========== ====== ====== ====== ================================= =================================== ================== 21 33 97.9 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Left flank : GAAGCCTATCCCCCCTTTGTCGTGAGGTGATCATGGTCGTCCTTGTCAGTTATGACGTGAATACACAGGATGCCGCAGGCAAGCGCAGGCTGCGCCGCATAGCCAGGCTTTGCACCAGCTGGGGGCAGCGGGTCCAGTTTTCTGTTTTTGAGTGCCTGCTCGATAATGCCCAATGGCAGGTCTTGCGTGCGCAGCTCCTGGACGAGATGGACCCGGAACGGGACAGCTTGCGCTTCTATTTTTTGGGGAACCACTGGCGAAGCAAGATAGAGCATATCGGCGTCAAGGCAGCCTACGATCCGGAAGGTCCGCTGATATTCTGATCGAGGACCTCTATGGGGCGTCTTTTCCCGGCAGGATATCGATGCCTGTTATATATTGATATCATTAAAAAATATATTTCCAGTTTGAAAAAACGTCCTGCCTTTGACCTGAATCTTTTTTCATCCTCGAAAAGGATTTGCTAATCACGGGAATCTACTGGATAAAACATGGAAACA # Right flank : GGGAGGCTCGAGCGCAGTTGCAAGCCCGCATGTCATGACGCTCCGTTGCGGATACATGACTTGAAGCTCCCTGCAAAAAAGTATCCGAAAGCTGGCCTAAAACAAAAAAGCCCTCACGGAGTTTTCCGTAAGGGCTTTTTGCTTTTTCCTGGAGCTGGTGAAGGGACTTGAACCCATAACCTGCAGATTACAAATCAGCTGCTCTACCGATTGAGCCACACCAGCATCTCTCCTCTTTTAGATGAATCCTGACCGCTTGGCAAGGGCTTTCGCACAGGGGGCTTTTCACCGGCCGGCTCTCCTGCCTCAGCATATGAAGGACAGCAGACGGCTCTCAAGCGGCTAGCGCTCTGCCGCTGCCAGCACGGGGACGAGCCCTTCCCGGCCGCAAATAGCCAGCGTCAGATGCTCCCGGGCGCGCGTCATCCCCACATAGGCCAGACGCCGCTGGCGGGGCTTCTCCGGCTGGAGGCGATCCATGCCCAGCAGGAAGACATGGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //