Array 1 206661-207787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNW010000001.1 Cronobacter sp. EKM102R Cronobacter_EKM102R_gdna101201_scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206661 29 96.6 32 T............................ GGCTTGATCAACACTCTGAACAGGGGCGTTCC 206722 29 96.6 32 T............................ TCCGCTCGGTCGTTTCTCTCTGCGGATCTTGC 206783 29 96.6 32 T............................ ATGAAATTTAACCACACGATACAGATTTATTA 206844 29 96.6 32 T............................ CCAGCGGCCGACATTCCGACACGTTCAGCCAG 206905 29 96.6 32 T............................ CTGCTTTTTTGCGTTTCAGTTACGAACCTGAC 206966 29 93.1 32 T...........................T GGACGCCGCGTAACCGTGAACGTCAGGTTTCC 207027 29 96.6 32 T............................ AATTTAGTGTGTATATAATAAACCCCATGAAG 207088 29 96.6 32 T............................ ATTCCGCGCCGATATAGTCAGCCACCAGTTCA 207149 29 96.6 32 T............................ GAGGTGACACCATCTTTTGTGTCGCGGGCAGA 207210 29 100.0 32 ............................. TAAAGCCATATTAGGGGGTGAGTGTGAGCTTT 207271 29 100.0 32 ............................. TCGCCGTCTGGCGAAAGGTGAAGCATGTGCCC 207332 29 100.0 32 ............................. CAGATCGGGGAGGGAATTACCCACGTTATCGT 207393 29 100.0 32 ............................. CTCATGGCTATGACGCTCCATTCGCAGCAAAG 207454 29 96.6 32 .........A................... GCGTGACGCGGGTCACATCACACACGCCAGAC 207515 29 100.0 32 ............................. CGGTGAGCTCGCTGTTCGCGCTGTCGAGTATC 207576 29 100.0 32 ............................. ACGACTCGCTCGTTGTTCGCAGTATCGATGTA 207637 29 100.0 32 ............................. TTCATACCAGACTCAGTGTTTTGCGGTCAGAC 207698 29 100.0 32 ............................. GCGTCCTGTATCTCGCTAAACGTGACGGTCGG 207759 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.7 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGTTAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGTTGGAGCCTGAAGGCGAGGTAGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACCCAGAAAGCGCTGCCGATTGACGGCGAGCTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGCGTGTGCCCGCCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACGAGCGTTGCTGAAAAAGGCGTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATCCTAAGCAGTACAAAGCGTTACTTTTAGT # Right flank : AAACTTTGTTGGCTGTACGAACAGCGCGACGCTGTCAGCCCCATATCCCGTCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTAAATTCTCAAGACTGCGCAACAAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGTTGCACGCGCATCTCATCTGCCATTGCCTGCTTATTGAAACTGAACATCACGGGCTGGTGCTGGTGGATACCGGTTTTGGTTGTGATGATATGCGCCATCCTGGCCGCCGTTTGCCGCTCTTTTTCCGGGCGCTGAACAATATTCAGTACCAGGAATCATTAACGGCGCTACATCATATTCAGGCGCTGGGCTTTAAGGCGGAAGATGTCCGCCACATTGTGCTGACGCATCTGGATTTCGACCACGCGGGCGGCATCAGCGATTTTCCGCACGCGCAGGTGCATTTGATGCAACGGGAAAT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234257-235017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNW010000001.1 Cronobacter sp. EKM102R Cronobacter_EKM102R_gdna101201_scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234257 29 100.0 32 ............................. GCGATTCTGGGGGGGACGCTGACGACACAGGC 234318 29 100.0 32 ............................. ACAGATCTCGACACTGTAACGACGCCAGGTGA 234379 29 100.0 32 ............................. GGGTTCTGCATTTCGTTAAGTGTAATTTCACG 234440 29 100.0 32 ............................. CCAGTGCGAAATCATTGTGGCTGTGGTGTTCC 234501 29 100.0 32 ............................. CGAGACCAGTCCACTATGGAAAACTCTCGCAA 234562 29 100.0 32 ............................. ATGATTTCAGGGTGAGCGCCGGTCATCCAGAG 234623 29 100.0 32 ............................. CAGCGCCAAATCTCCGACGCCCGCGCATTGCT 234684 29 100.0 32 ............................. CAGCTGACGCAAATCCCTCGGCAACACAAACA 234745 29 100.0 32 ............................. AACGGGAGCAGAGTGTCGTCGCCGTGGATATG 234806 29 96.6 32 .............A............... GAGATTTGGGAGGAGATAGAAAAAACCGGCGC 234867 29 100.0 32 ............................. ATTCTTGAGCGGCGGTGTTGACGTTCTGTGTG 234928 29 96.6 32 ............T................ AACCCGAAATCGTTGGGCTTCATGCCGATTCA 234989 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGGCGCCGGTGAAATCGAACTGCCGCAGCCCGCGGCAGACATGCTGCCGCCCGCGATACCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGCCCAGGCTTCGCGGGCGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGGGATGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAAGAGGGCAATGTAGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCAACGGATTCCGGTGGATTTAGACGGCCTGCGGCTTGTTTCTTTTTTACCGTTGGAAAATCAGTAGGTTAATGGTTCTTTAATAATATGAGATTGTAAATCAAACGTTGGTAGGATGTTGACTGCCAAAAAAGTGTAATAAATACAGAGATGTAGCTTTAGA # Right flank : TCATCCGTTGAGGCTTCTTTCTGCGCCACCAGCGTGTTCCCTGCTGCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCTTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGCGGGTGCGCTTCGCTTATCCACCCTACAGGCGTAGCTCCCCATGTCCGGTTAGTGCGCTTCGCATACCCACCCTACAGGCGTAGCTCCCCATGTCCGGTTAGTGCGATTCGCATACCCACCCTATAGGCGTAGATCCTCATGCCCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGCTCCCCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGCTCCCCATGTCCGGTTAGTGCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //