Array 1 9115-8307 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVV01000005.1 Pseudomonas cichorii strain Ku1408-5-5 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9114 28 100.0 32 ............................ AGGCTATGGCTCAGATCGCCAAGCTCCAGGGA 9054 28 100.0 32 ............................ AGGTAAATGAAGCGTTCGGCCATACCGGAGCC 8994 28 100.0 32 ............................ ACAAACGACTGAAAACCGACCGCCACCACCAA 8934 28 100.0 32 ............................ AGCAAGTTCGATCCGTCGCGCCAGGGCGGATA 8874 28 100.0 32 ............................ AGAACGGTGATGGTTTCAGCGTTCAGCAGGCC 8814 28 100.0 32 ............................ TGCATATCCAGGCGCTGAACTGGCCGTTTGAC 8754 28 100.0 32 ............................ AAGTCGCGGCACAGGTCACGAACGATTGCAGG 8694 28 100.0 32 ............................ ACACACCCAGGCGAAGACTGGGGGTCACTGCG 8634 28 100.0 32 ............................ AAAACAGGAACAAGGTCGGTTGCGCCCTGCTC 8574 28 100.0 32 ............................ TTGCCGACATCCAGCTGACCAGCGCCGACTTC 8514 28 96.4 32 ..........A................. AAGCGAGCCACAGCCAGAAAGATCGCGCCGCA 8454 28 96.4 32 .................T.......... ATCTTCAAAATTCAGATTGAATGCGTTGTTGG 8394 28 96.4 32 .G.......................... TGCACTAGATTCTGTAATTGCATCACCTGGGA 8334 28 96.4 0 ............C............... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.0 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCTGCAAAAAACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGGTGAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCAGGGCTGTAGGAGCGAATTCATTCGCGAGGCGGTGTTCCAGACACTACATATCCTTTTAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAAGTCCGGCGCCAAACCACGACTTAACGCACCCTCTTTTTGACCCTCTTTTTTCAGACTCCGTCGTCCCTTTTAAAATCAATAACTTACGAGAGCCACAAAAAAGAGGGTAAAACGGCTTAAGGTAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : ATCCTCGAAGTGCAGGAAGAATGCGTTGTTGGATTCACTGCCGCACAGGCAGCCCAACCCTCATGATCGCCAAATCCTACACCACACTTACACACGCCCTCCAACCACCTACTCCCCATCCCCTCACCCAAACTGAATCCCCTCATTTTCCCCACCCAGCCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGATCTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAACGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGACTCCCCGTGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGACACAGCCGCATGCTCCGCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13236-12007 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVV01000018.1 Pseudomonas cichorii strain Ku1408-5-5 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13235 28 100.0 32 ............................ ACTGGTACAACTCGCAAGGTCTGGTTCAAGAC 13175 28 100.0 32 ............................ ATATTCAACCACGATGCCAGTGCGCATCCAGA 13115 28 100.0 32 ............................ ACCTCATCATCCGGCTCAAGCTTCCGATCACC 13055 28 100.0 32 ............................ AAGCCAAAGCGCATGAACTCGCTCAGCCATCT 12995 28 100.0 32 ............................ CAATGCTCTCGATCCCCACGAACAGCCGGGTT 12935 28 100.0 32 ............................ TGTAACAAAGTTGATCGGCGTGAACAGCCTGG 12875 28 100.0 32 ............................ GTAGAGGTGGTGCAGCAGGAACGGCCCCGGGC 12815 28 100.0 32 ............................ AGCACATCAAGCGGAGGGGTAGACGCGGGAAA 12755 28 100.0 32 ............................ AAAGAGGGAAGGATTCCGGCTATGCCGGTGCC 12695 28 100.0 32 ............................ AAAGAGGGAAGGATTCCGGCTATGCCGGTGCC 12635 28 100.0 32 ............................ AGATCAAGACCCCATATGTCCATTATCCGGAG 12575 28 100.0 32 ............................ TTCTGTTGCGGCCAACGCTTTCGTATTTGGCC 12515 28 100.0 32 ............................ TGAACAAGGAAGGGATCAGTGACGTTGATCAG 12455 28 100.0 32 ............................ AGCAGAAACGAGCGTCGAGCACTGAGGTTAAA 12395 28 100.0 32 ............................ ACGAAATGGCTGATATCGAATATGTGGCGCTA 12335 28 100.0 32 ............................ TGGTATGCCGCTCGCCACAATGCGTCAGGCAC 12275 28 100.0 32 ............................ AAGGACCGAGCTGGCGACTGGGCCAAAGCCGT 12215 28 100.0 32 ............................ TTCGTGATTTCACAGTTGACCTGGATGCCGGC 12155 28 100.0 32 ............................ ATGTTCGACCTCCAGGGATTTTCTGAATGAGT 12095 28 92.9 32 ............A.....C......... AGGAACAGGATCGACAGCACGTATTGCGGCTC 12035 28 89.3 0 ...........CA..A............ | G [12009] ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GGCAGAATCAGCATTCCGGAAAATGTTTTTGTGCGTCTATTGCTCGCTGTAGATACGGGCACGCATCGGTAGATATTGTCCCTTGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGCTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGTATACACAAAACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGTTGTACATTGAAGTCGCCAGCAAGCTGCCCTGCACAAAGTGATTTATCAAAAGATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAATGAACCCTTTCTTGACCCTCTTTTTTTCACCATTGGTTCGTCCTTTAAAAATCAATGACTTATAAAACTCGATAAAAAAAGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : GCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATAGATATCTATCGCTTGAAGCACTGCTTTCGCGACTGAAGTCGCTCCCACACCAGCCAATTCATTCGCGAAAGGCTTTAAAGGCATCCTGCACAAACCTTCTAGACTTCCCATTCCCCATGCGCGATAACACGCCTCTCTATCCCCTTGTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTAGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCTCATGCCTATGATCCTCACTGGCACGACAGTTATCTGGTGGGTGTGACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGTGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACGTATCGGACGCTGTACCTCGACCCGCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13865-14735 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVV01000018.1 Pseudomonas cichorii strain Ku1408-5-5 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13865 28 100.0 32 ............................ ATCAAAATAGAAAAAGGCCGAATTAACGGCCT 13925 28 100.0 32 ............................ AAGGCAACCTTCCAAACTGCATGATCGCGCTG 13985 28 100.0 32 ............................ ACACAGCAAGAGGTGAGCGATGAAACCGAGAA 14045 28 100.0 32 ............................ AGTTCAACCTTCCGCTTCCAACAACTTCCCGC 14105 28 100.0 32 ............................ AGATCGAAATAAAGGCGCTGCGCCAGCAACTG 14165 28 100.0 32 ............................ TATTTCAACCGCAGAACGCGGCTGGTGGTGGT 14225 28 100.0 32 ............................ ATTGGCGCCGAGAACAGGATCGGTCTTTCCTT 14285 28 100.0 33 ............................ GACGACATACCGCAGACGTTCGCCGCGCTGTTT 14346 28 100.0 33 ............................ AACCAGCTTCGCCGAAGCCTTCACTGATGTCAG 14407 28 100.0 33 ............................ AAGTCGATCATTGCTGACATGGGGCGTATTGCT 14468 28 100.0 32 ............................ AAGCTGGGTGCGCAGACGGGAAATCTCCTGAC 14528 28 100.0 32 ............................ GAGCGCACCCGCCACCGTTGGAGATCCGGTAT 14588 28 100.0 32 ............................ ATATCGCCATCTTCCCAGTAGTAGAAATCCAC 14648 28 85.7 32 ...........CA..A......C..... TACGACCCGGTCATTAATGGTCATCTGCTCTC 14708 28 75.0 0 A..A.......AAC........C.C... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.4 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : TCAAGAAAGGGTTCATTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATCTTTTGATAAATCACTTTGTGCAGGGCAGCTTGCTGGCGACTTCAATGTACAACCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTTTTGTGTATACCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAGCGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGCCCCTCTTTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : ACAATCAAATCCACCCCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAACACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCACCCCCAACCTCAAAAAACCTAAAGCATCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGCTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 24582-23413 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVV01000018.1 Pseudomonas cichorii strain Ku1408-5-5 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24581 28 100.0 32 ............................ AGCCGGTGGCCATCTAGCCAATGGGGGAAGGA 24521 28 100.0 32 ............................ AGAGTAAAGGGGAAAGGGGAAATGATCAATAC 24461 28 100.0 32 ............................ AGGAACCGGAGAATGGCAGCACCACCGAACCT 24401 28 100.0 32 ............................ GAGTAACACCCAGCTAAATGTCTCTGCCGCAC 24341 28 100.0 32 ............................ ACGAACAGCGTAAAGCGCTGACCCCTAAGTAA 24281 28 100.0 32 ............................ TCACGCTGGGCGCGCTCAACGGCCTGGCGGGC 24221 28 100.0 32 ............................ AGAGCGGAAACGCTTTCTCACCAACGAAATGT 24161 28 100.0 32 ............................ TGGGCGGAAACGTCCATGCAGAGCAATTGCCC 24101 28 100.0 33 ............................ GGTCAAGGTCGAGCCGTCGCCGCCGGTCAAGGT 24040 28 100.0 32 ............................ GTTCCCTGACTTGATTGAGCAGCCTCAGTCCA 23980 28 100.0 32 ............................ AACCTGCGCGATGCCAACCTGAGCGGTGCCAA 23920 28 100.0 32 ............................ AATTGGAATCCGTTTAAGCTGGATGACACCAA 23860 28 100.0 32 ............................ ATGGCGTCGATGATTTCCTGCTTGTTCGCCAG 23800 28 100.0 32 ............................ TGCACTTGCTTGAACAGCTCGGCAGTATCGGC 23740 28 100.0 32 ............................ TGAAGGTTGGGCTTGACCAGCGCCTGCGGGTA 23680 28 100.0 32 ............................ TCCCAGCGAAATAACGGAGTTATGCCATGCCT 23620 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 23560 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 23501 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [23475] 23441 28 89.3 0 ........T......A........A... | A [23428] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.8 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGACATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCCCATGCTGAATGAACAACAGGAATGTCTGGCCGTTGGTGCGACTGCGCAGTTGGGTGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGTATCGGGCTCAGTTCGCCTACTCGCACATGGTCACGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //