Array 1 378165-377958 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNO01000001.1 Vibrio cholerae strain 1376_01 NODE_1_length_495073_cov_59.5276_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 378164 27 92.6 33 ....A.A.................... AAAATCACGTTAAACGATGCTCGGTAAAGTTCT 378104 27 100.0 33 ........................... AGCCAGCCCATTTCACCAGTGGCTTCATTACGC 378044 27 100.0 33 ........................... ATTCACCAAGCGCGAGCAGAACTCTTGCGGTCG 377984 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================= ================== 4 27 98.2 33 GTGTTCTGCCGAATAGGCAGCCAAGAA # Left flank : TAGCTTGTTAAGCATGGTAAGAGTAATTTAGAGCTGGATGAAAAATGGTGGAGAATGTGGCTAGGTGTGGTACTTCTCTGTCGTCAGTTAAAAAGTCAATCAATGGGAGGACATCCATGACCAATATCAATACCAAAGCCGCCACTGTGCTGGGACTGAGCCTGATTATCGGGCTTTCCGCACTGGGCTTCTTGGTACAACAAATGGCGGTTAAGTTTAAAGAGTACGAGCGCGTTGTGGCGGTGAAAGGGCTGTCTGAACGTGAAGTGGTGGCCGATACCGTCATCTGGCCTATTCAGTTTACCGTTGCGGATAATCAGCTCTCTTCTCTGTTTGCCACTGTCGATCAGCAAACTCAGCTCATTACCCAATTCTTAGTGGAAAAAGGCGTGGATCGCGCAGCGATTTCCCTTTCAGCACCTGCTGTGATCGATAAAAAAGCTCAACAATATGGTGAAGACCGCGCTGAGTTTCGCTATTTAGCGACTCAAACCTTGACC # Right flank : TAGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGAACTGCAACGCACTTTTGCCCCTAAGTTTGTTTCCACGCATTCGCTCTAACGACAGTCTAGCTGATTTTGCTATACTGCAACTAATCAAAATCTTCTGTCAGGTTGTATGCGATGAGCAAGAAAAAGTTGACCGAAAAAGTGCTGTTAGAAGGTATGACTCCTTATAATACTCACAGTGATTTGCTCGCCAAGACCGAAACAAAGACTGATTGGATGTCTTTCGCCGACGAGGTTGAATTGGTTACACATGATTTTATGACTAACCGAAATGAGGTTTTCGATGAGCCTAGTTCCGATTTGGTGAACCCAGATATTTTTCTTTCAAATCTCAAATTAGCGCTTGATAACCTTCCAGATGGTGATAT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 32333-32540 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNO01000023.1 Vibrio cholerae strain 1376_01 NODE_23_length_32583_cov_54.1172_ID_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32333 28 100.0 32 ............................ GAAATTCTTATTTAATCTCGCTTGAATTTCGT 32393 28 100.0 32 ............................ GCACCAAATGGGATAAACATCGTTGCAATTGT 32453 28 100.0 32 ............................ TTGTTAGCTTCACCACCCATGAGCATATCAAG 32513 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGTTCTGCCGAATAGGCAGCCAAGAAA # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGTCATCGATAGTTTTCATCGAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACAAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCATTTTGACGAAGACTCTTTTTTAGTTCAGTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAAGGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : GCCATCCCTTTTCGCTCACCAGAAGCCACAGGGTGTTCTGCCG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 92988-92300 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNO01000011.1 Vibrio cholerae strain 1376_01 NODE_11_length_100726_cov_59.0526_ID_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92987 28 100.0 32 ............................ TTTTTGCTCTTGCGCTTTCTCGCTTGAGTGTT 92927 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 92867 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 92807 28 100.0 31 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCA 92748 28 92.9 32 TG.......................... TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 92688 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 92627 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 92567 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 92507 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 92447 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 92387 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 92327 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACGATCTGATCATGAAGTTAAAAATATGAGAAACTCGTACATGATTATCATTGAGCAGCTAAAAAAAGTGAAAGATACCCGTTCGCATATCAACCAAGTGTATCCTGTTATGGAAGTGGCTTTCTTGGTCATAACCGCCATGATTTGTGGTCAAAATAAGTGGACTGATATTAAGGATTTCGGCGAAGGAAATATCGAGTGGTTGCGTGAGTATCTCCCCTACGACAATGGTCTCCCCACTCGGCATAATATTGCCGCGATAATGAGAACTGTTGTACCAGAGACGCTCTTGGAAGCGATGGTAGGCTGGGTCAATTTGCACAGAGAAAAGCATGCTCAGCCCATAATCAGCGTTGATGGGAAGGTTCTAAAAGGAGCGAAAGCAAGCAAACAAGAACACCCTCTCTATATGGTTTCGGCATTTGACGTAGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //